Volume 21, Issue 8 | August 2011

Research
- - Extensive relationship between antisense transcription and alternative splicing in the human genome
    A. Sorana Morrissy
    Malachi Griffith
    Marco A. Marra
    First Published June 30, 2011
  - Genetic analysis of complex traits in the emerging Collaborative Cross
    David L. Aylor
    William Valdar
    Wendy Foulds-Mathes
    Ryan J. Buus
    Ricardo A. Verdugo
    Ralph S. Baric Martin T. Ferris Jeff A. Frelinger Mark Heise Matt B. Frieman Lisa E. Gralinski Timothy A. Bell John D. Didion Kunjie Hua Derrick L. Nehrenberg Christine L. Powell Jill Steigerwalt Yuying Xie Samir N.P. Kelada Francis S. Collins Ivana V. Yang David A. Schwartz Lisa A. Branstetter Elissa J. Chesler Darla R. Miller Jason Spence Eric Yi Liu Leonard McMillan Abhishek Sarkar Jeremy Wang Wei Wang Qi Zhang Karl W. Broman Ron Korstanje Caroline Durrant Richard Mott Fuad A. Iraqi
    ...[+32 authors]...,
    Daniel Pomp
    David Threadgill
    Fernando Pardo-Manuel de Villena
    Gary A. Churchill
    First Published March 15, 2011
  - Genetic analysis in the Collaborative Cross breeding population
    Vivek M. Philip
    Greta Sokoloff
    Cheryl L. Ackert-Bicknell
    Martin Striz
    Lisa Branstetter
    Melissa A. Beckmann Jason S. Spence Barbara L. Jackson Leslie D. Galloway Paul Barker Ann M. Wymore Patricia R. Hunsicker David C. Durtschi Ginger S. Shaw Sarah Shinpock Kenneth F. Manly Darla R. Miller Kevin D. Donohue Cymbeline T. Culiat Gary A. Churchill William R. Lariviere
    ...[+16 authors]...,
    Abraham A. Palmer
    Bruce F. O'Hara
    Brynn H. Voy
    Elissa J. Chesler
    First Published July 6, 2011
  - Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection
    Caroline Durrant
    Hanna Tayem
    Binnaz Yalcin
    James Cleak
    Leo Goodstadt
    First Published April 14, 2011
  - High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation
    E. Josephine Clowney
    Angeliki Magklara
    Bradley M. Colquitt
    Nidhi Pathak
    Robert P. Lane
    First Published June 24, 2011
  - Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development
    Sharmistha Pal
    Ravi Gupta
    Hyunsoo Kim
    Priyankara Wickramasinghe
    Valérie Baubet
    First Published June 28, 2011
  - Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
    Gabriel E. Zentner
    Paul J. Tesar
    Peter C. Scacheri
    First Published June 1, 2011
  - Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells
    Hong-Bing Yu
    Rory Johnson
    Galih Kunarso
    Lawrence W. Stanton
    First Published June 1, 2011
  - A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids
    Bridgett M. vonHoldt
    John P. Pollinger
    Dent A. Earl
    James C. Knowles
    Adam R. Boyko
    Heidi Parker Eli Geffen Malgorzata Pilot Wlodzimierz Jedrzejewski Bogumila Jedrzejewska Vadim Sidorovich Claudia Greco Ettore Randi Marco Musiani Roland Kays
    ...[+10 authors]...,
    Carlos D. Bustamante
    Elaine A. Ostrander
    John Novembre
    Robert K. Wayne
    First Published May 12, 2011
  - Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
    Stephen R. Voss
    D. Kevin Kump
    Srikrishna Putta
    Nathan Pauly
    Anna Reynolds
    First Published April 11, 2011
  - Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis
    Ozren Bogdanović
    Steven W. Long
    Simon J. van Heeringen
    Arie B. Brinkman
    Jose Luis Gómez-Skarmeta
    First Published June 2, 2011
  - Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
    Håvard Aanes
    Cecilia L. Winata
    Chi Ho Lin
    Jieqi P. Chen
    Kandhadayar G. Srinivasan
    Serene G.P. Lee Adrian Y.M. Lim Hajira Shreen Hajan Philippe Collas Guillaume Bourque
    ...[+5 authors]...,
    Zhiyuan Gong
    Vladimir Korzh
    Peter Aleström
    Sinnakaruppan Mathavan
    First Published May 9, 2011
  - The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
    Sanne Nygaard
    Guojie Zhang
    Morten Schiøtt
    Cai Li
    Yannick Wurm
    Haofu Hu Jiajian Zhou Lu Ji Feng Qiu Morten Rasmussen Hailin Pan Frank Hauser
    ...[+7 authors]...,
    Anders Krogh
    Cornelis J.P. Grimmelikhuijzen
    Jun Wang
    Jacobus J. Boomsma
    First Published June 30, 2011
Methods
- - Discovery and assessment of conserved Pax6 target genes and enhancers
    Pedro Coutinho
    Sofia Pavlou
    Shipra Bhatia
    Kevin J. Chalmers
    Dirk A. Kleinjan
    First Published May 26, 2011
  - Quantitative evaluation of all hexamers as exonic splicing elements
    Shengdong Ke
    Shulian Shang
    Sergey M. Kalachikov
    Irina Morozova
    Lin Yu
    First Published June 9, 2011
  - Putting genetic interactions in context through a global modular decomposition
    Jeremy Bellay
    Gowtham Atluri
    Tina L. Sing
    Kiana Toufighi
    Michael Costanzo
    Philippe Souza Moraes Ribeiro Gaurav Pandey Joshua Baller Benjamin VanderSluis Magali Michaut Sangjo Han Philip Kim Grant W. Brown
    ...[+8 authors]...,
    Brenda J. Andrews
    Charles Boone
    Vipin Kumar
    Chad L. Myers
    First Published June 29, 2011
  - Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing
    Ole Skovgaard
    Mads Bak
    Anders Løbner-Olesen
    Niels Tommerup
    First Published May 9, 2011

Table of Contents

Volume 21, Issue 8 | August 2011

Research

Extensive relationship between antisense transcription and alternative splicing in the human genome

Genetic analysis of complex traits in the emerging Collaborative Cross

Genetic analysis in the Collaborative Cross breeding population

Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection

High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming

Methods

Discovery and assessment of conserved Pax6 target genes and enhancers

Quantitative evaluation of all hexamers as exonic splicing elements

Putting genetic interactions in context through a global modular decomposition

Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing

Table of Contents

Volume 21, Issue 8 | August 2011

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Research

Methods