Volume 20, Issue 9 | September 2010

Perspective
- - Assembly of large genomes using second-generation sequencing
    Michael C. Schatz
    Arthur L. Delcher
    Steven L. Salzberg
    First Published May 27, 2010
Research
- - The initial peopling of the Americas: A growing number of founding mitochondrial genomes from Beringia
    Ugo A. Perego
    Norman Angerhofer
    Maria Pala
    Anna Olivieri
    Hovirag Lancioni
    Baharak Hooshiar Kashani Valeria Carossa Jayne E. Ekins Alberto Gómez-Carballa Gabriela Huber Bettina Zimmermann Daniel Corach Nora Babudri Fausto Panara Natalie M. Myres Walther Parson Ornella Semino
    ...[+12 authors]...,
    Antonio Salas
    Scott R. Woodward
    Alessandro Achilli
    Antonio Torroni
    First Published June 29, 2010
  - Susceptibility to chronic pain following nerve injury is genetically affected by CACNG2
    Jonathan Nissenbaum
    Marshall Devor
    Ze'ev Seltzer
    Mathias Gebauer
    Martin Michaelis
    Michael Tal Ruslan Dorfman Merav Abitbul-Yarkoni Yan Lu Tina Elahipanah Sonia delCanho Anne Minert Kaj Fried Anna-Karin Persson Hagai Shpigler
    ...[+10 authors]...,
    Erez Shabo
    Benjamin Yakir
    Anne Pisanté
    Ariel Darvasi
    First Published August 5, 2010
  - An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer
    Nora F. Wasserman
    Ivy Aneas
    Marcelo A. Nobrega
    First Published July 13, 2010
  - Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure
    Clelia Tiziana Storlazzi
    Angelo Lonoce
    Maria C. Guastadisegni
    Domenico Trombetta
    Pietro D'Addabbo
    Giulia Daniele Alberto L'Abbate Gemma Macchia Cecilia Surace Klaas Kok Reinhard Ullmann Stefania Purgato
    ...[+7 authors]...,
    Orazio Palumbo
    Massimo Carella
    Peter F. Ambros
    Mariano Rocchi
    First Published July 14, 2010
  - MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain
    Mehmet Somel
    Song Guo
    Ning Fu
    Zheng Yan
    Hai Yang Hu
    Ying Xu Yuan Yuan Zhibin Ning Yuhui Hu Corinna Menzel Hao Hu
    ...[+6 authors]...,
    Michael Lachmann
    Rong Zeng
    Wei Chen
    Philipp Khaitovich
    First Published July 20, 2010
  - Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences
    Wei-Hao Shang
    Tetsuya Hori
    Atsushi Toyoda
    Jun Kato
    Kris Popendorf
    First Published June 9, 2010
  - Patching gaps in plant genomes results in gene movement and erosion of colinearity
    Thomas Wicker
    Jan P. Buchmann
    Beat Keller
    First Published June 7, 2010
  - Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
    Tingting Lu
    Guojun Lu
    Danlin Fan
    Chuanrang Zhu
    Wei Li
    Qiang Zhao Qi Feng Yan Zhao
    ...[+3 authors]...,
    Yunli Guo
    Wenjun Li
    Xuehui Huang
    Bin Han
    First Published July 13, 2010
  - Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe
    Sandrine Lenglez
    Damien Hermand
    Anabelle Decottignies
    First Published August 5, 2010
Methods
- - High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
    Adam D. Ewing
    Haig H. Kazazian
    First Published May 20, 2010
  - Methylation profiling in individuals with uniparental disomy identifies novel differentially methylated regions on chromosome 15
    Andrew J. Sharp
    Eugenia Migliavacca
    Yann Dupre
    Elisavet Stathaki
    Mohammad Reza Sailani
    Alessandra Baumer Albert Schinzel Deborah J. Mackay David O. Robinson Gilda Cobellis
    ...[+5 authors]...,
    Luigi Cobellis
    Han G. Brunner
    Bernhard Steiner
    Stylianos E. Antonarakis
    First Published July 14, 2010
  - Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples
    Katherine Elena Varley
    Robi David Mitra
    First Published July 13, 2010
  - High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection
    Sara J. Cooper
    Gregory L. Finney
    Shauna L. Brown
    Sven K. Nelson
    Jay Hesselberth
    First Published July 7, 2010
Resources
- - The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    Aaron McKenna
    Matthew Hanna
    Eric Banks
    Andrey Sivachenko
    Kristian Cibulskis
    Andrew Kernytsky Kiran Garimella
    ...[+2 authors]...,
    David Altshuler
    Stacey Gabriel
    Mark Daly
    Mark A. DePristo
    First Published July 19, 2010
  - Structural and operational complexity of the Geobacter sulfurreducens genome
    Yu Qiu
    Byung-Kwan Cho
    Young Seoub Park
    Derek Lovley
    Bernhard Ø. Palsson
    First Published June 30, 2010

Table of Contents

Volume 20, Issue 9 | September 2010

Perspective

Assembly of large genomes using second-generation sequencing

Research

The initial peopling of the Americas: A growing number of founding mitochondrial genomes from Beringia

Susceptibility to chronic pain following nerve injury is genetically affected by CACNG2

An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer

Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure

MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain

Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences

Patching gaps in plant genomes results in gene movement and erosion of colinearity

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe

Methods

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

Methylation profiling in individuals with uniparental disomy identifies novel differentially methylated regions on chromosome 15

Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples

High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection

Resources

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Structural and operational complexity of the Geobacter sulfurreducens genome

Table of Contents

Volume 20, Issue 9 | September 2010

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Perspective

Research

Methods

Resources