Volume 20, Issue 7 | July 2010

Research
- - The mutational spectrum of non-CpG DNA varies with CpG content
    Jean-Claude Walser
    Anthony V. Furano
    First Published May 24, 2010
  - Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
    Robert Shoemaker
    Jie Deng
    Wei Wang
    Kun Zhang
    First Published April 23, 2010
  - Sequence features that drive human promoter function and tissue specificity
    Jane M. Landolin
    David S. Johnson
    Nathan D. Trinklein
    Shelly F. Aldred
    Catherine Medina
    First Published May 25, 2010
  - Characterization of the RNA content of chromatin
    Tanmoy Mondal
    Markus Rasmussen
    Gaurav Kumar Pandey
    Anders Isaksson
    Chandrasekhar Kanduri
    First Published April 19, 2010
  - Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
    Phillip A. Morin
    Frederick I. Archer
    Andrew D. Foote
    Julia Vilstrup
    Eric E. Allen
    Paul Wade John Durban Kim Parsons Robert Pitman Lewyn Li Pascal Bouffard Sandra C. Abel Nielsen
    ...[+7 authors]...,
    Morten Rasmussen
    Eske Willerslev
    M. Thomas P. Gilbert
    Timothy Harkins
    First Published April 22, 2010
  - Evolution of a genomic regulatory domain: The role of gene co-option and gene duplication in the Enhancer of split complex
    Elizabeth J. Duncan
    Peter K. Dearden
    First Published May 10, 2010
  - Genome-wide gene expression regulation as a function of genotype and age in C. elegans
    Ana Viñuela
    L. Basten Snoek
    Joost A.G. Riksen
    Jan E. Kammenga
    First Published May 20, 2010
  - Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
    Daniel E. Neafsey
    Bridget M. Barker
    Thomas J. Sharpton
    Jason E. Stajich
    Daniel J. Park
    Emily Whiston Chiung-Yu Hung Cody McMahan Jared White Sean Sykes David Heiman Sarah Young Qiandong Zeng Amr Abouelleil Lynne Aftuck Daniel Bessette Adam Brown Michael FitzGerald Annie Lui J. Pendexter Macdonald Margaret Priest Marc J. Orbach John N. Galgiani Theo N. Kirkland Garry T. Cole
    ...[+20 authors]...,
    Bruce W. Birren
    Matthew R. Henn
    John W. Taylor
    Steven D. Rounsley
    First Published June 1, 2010
  - A global network of coexisting microbes from environmental and whole-genome sequence data
    Samuel Chaffron
    Hubert Rehrauer
    Jakob Pernthaler
    Christian von Mering
    First Published May 10, 2010
Method
- - Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families
    Prianka V. Patel
    Tara A. Gianoulis
    Robert D. Bjornson
    Kevin Y. Yip
    Donald M. Engelman
    First Published April 29, 2010
  - Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns
    John R. Edwards
    Anne H. O'Donnell
    Robert A. Rollins
    Heather E. Peckham
    Clarence Lee
    Maria H. Milekic Benjamin Chanrion Yutao Fu Tao Su Hanina Hibshoosh
    ...[+5 authors]...,
    Jay A. Gingrich
    Fatemeh Haghighi
    Robert Nutter
    Timothy H. Bestor
    First Published May 20, 2010
  - Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing
    Hui Wang
    Abanti Chattopadhyay
    Zhe Li
    Bryce Daines
    Yumei Li
    First Published May 14, 2010
  - Strand-specific deep sequencing of the transcriptome
    Ana P. Vivancos
    Marc Güell
    Juliane C. Dohm
    Luis Serrano
    Heinz Himmelbauer
    First Published June 2, 2010

Table of Contents

Volume 20, Issue 7 | July 2010

Research

The mutational spectrum of non-CpG DNA varies with CpG content

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

Sequence features that drive human promoter function and tissue specificity

Characterization of the RNA content of chromatin

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

Evolution of a genomic regulatory domain: The role of gene co-option and gene duplication in the Enhancer of split complex

Genome-wide gene expression regulation as a function of genotype and age in C. elegans

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

A global network of coexisting microbes from environmental and whole-genome sequence data

Method

Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns

Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing

Strand-specific deep sequencing of the transcriptome

Table of Contents

Volume 20, Issue 7 | July 2010

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Research

Method