Volume 20, Issue 2 | February 2010

Article
- - Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
    Ichiro Hiratani
    Tyrone Ryba
    Mari Itoh
    Joy Rathjen
    Michael Kulik
    Bernadett Papp Eden Fussner David P. Bazett-Jones
    ...[+3 authors]...,
    Kathrin Plath
    Stephen Dalton
    Peter D. Rathjen
    David M. Gilbert
    First Published December 1, 2009
Letter
- - Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus
    Biola M. Javierre
    Agustin F. Fernandez
    Julia Richter
    Fatima Al-Shahrour
    J. Ignacio Martin-Subero
    Javier Rodriguez-Ubreva Maria Berdasco Mario F. Fraga Terrance P. O'Hanlon Lisa G. Rider Filipe V. Jacinto F. Javier Lopez-Longo Joaquin Dopazo Marta Forn Miguel A. Peinado Luis Carreño Amr H. Sawalha John B. Harley
    ...[+13 authors]...,
    Reiner Siebert
    Manel Esteller
    Frederick W. Miller
    Esteban Ballestar
    First Published December 22, 2009
  - Sex-specific and lineage-specific alternative splicing in primates
    Ran Blekhman
    John C. Marioni
    Paul Zumbo
    Matthew Stephens
    Yoav Gilad
    First Published December 15, 2009
  - Bayesian network analysis of targeting interactions in chromatin
    Bas van Steensel
    Ulrich Braunschweig
    Guillaume J. Filion
    Menzies Chen
    Joke G. van Bemmel
    First Published December 9, 2009
  - Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
    Heather K. MacAlpine
    Raluca Gordân
    Sara K. Powell
    Alexander J. Hartemink
    David M. MacAlpine
    First Published December 7, 2009
  - Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    Jian Lu
    Andrew G. Clark
    First Published November 30, 2009
  - Nucleosome landscape and control of transcription in the human malaria parasite
    Nadia Ponts
    Elena Y. Harris
    Jacques Prudhomme
    Ivan Wick
    Colleen Eckhardt-Ludka
    First Published January 6, 2010
  - High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe
    Yabin Guo
    Henry L. Levin
    First Published December 29, 2009
Methods
- - A new strategy for genome assembly using short sequence reads and reduced representation libraries
    Andrew L. Young
    Hatice Ozel Abaan
    Daniel Zerbino
    James C. Mullikin
    Ewan Birney
    First Published February 1, 2010
  - Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
    Michiel J.L. de Hoon
    Ryan J. Taft
    Takehiro Hashimoto
    Mutsumi Kanamori-Katayama
    Hideya Kawaji
    Mitsuoki Kawano Mami Kishima Timo Lassmann Geoffrey J. Faulkner John S. Mattick Carsten O. Daub
    ...[+6 authors]...,
    Piero Carninci
    Jun Kawai
    Harukazu Suzuki
    Yoshihide Hayashizaki
    First Published January 5, 2010
Resource
- - De novo assembly of human genomes with massively parallel short read sequencing
    Ruiqiang Li
    Hongmei Zhu
    Jue Ruan
    Wubin Qian
    Xiaodong Fang
    Zhongbin Shi Yingrui Li Shengting Li Gao Shan Karsten Kristiansen
    ...[+5 authors]...,
    Songgang Li
    Huanming Yang
    Jian Wang
    Jun Wang
    First Published December 17, 2009
  - A SNP discovery method to assess variant allele probability from next-generation resequencing data
    Yufeng Shen
    Zhengzheng Wan
    Cristian Coarfa
    Rafal Drabek
    Lei Chen
    Elizabeth A. Ostrowski Yue Liu
    ...[+2 authors]...,
    George M. Weinstock
    David A. Wheeler
    Richard A. Gibbs
    Fuli Yu
    First Published December 17, 2009
  - A high-resolution association mapping panel for the dissection of complex traits in mice
    Brian J. Bennett
    Charles R. Farber
    Luz Orozco
    Hyun Min Kang
    Anatole Ghazalpour
    Nathan Siemers Michael Neubauer Isaac Neuhaus Roumyana Yordanova Bo Guan Amy Truong Wen-pin Yang Aiqing He Paul Kayne Peter Gargalovic Todd Kirchgessner Calvin Pan Lawrence W. Castellani Emrah Kostem
    ...[+14 authors]...,
    Nicholas Furlotte
    Thomas A. Drake
    Eleazar Eskin
    Aldons J. Lusis
    First Published January 6, 2010

Table of Contents

Volume 20, Issue 2 | February 2010

Article

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

Letter

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus

Sex-specific and lineage-specific alternative splicing in primates

Bayesian network analysis of targeting interactions in chromatin

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Nucleosome landscape and control of transcription in the human malaria parasite

High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe

Methods

A new strategy for genome assembly using short sequence reads and reduced representation libraries

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

Resource

De novo assembly of human genomes with massively parallel short read sequencing

A SNP discovery method to assess variant allele probability from next-generation resequencing data

A high-resolution association mapping panel for the dissection of complex traits in mice

Table of Contents

Volume 20, Issue 2 | February 2010

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