Volume 19, Issue 4 | April 2009

Next-Generation DNA Sequencing/Review
- - Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
    Melissa J. Fullwood
    Chia-Lin Wei
    Edison T. Liu
    Yijun Ruan
    First Published April 1, 2009
Article
- - Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing
    Jung-Hyun Kim
    Thomas Ebersole
    Natalay Kouprina
    Vladimir N. Noskov
    Jun-Ichirou Ohzeki
    Hiroshi Masumoto Brankica Mravinac Beth A. Sullivan Adam Pavlicek Sinisa Dovat Svetlana D. Pack Yoo-Wook Kwon
    ...[+7 authors]...,
    Patrick T. Flanagan
    Dmitri Loukinov
    Victor Lobanenkov
    Vladimir Larionov
    First Published January 13, 2009
  - Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die?
    Matthew S. Comeaux
    Astrid M. Roy-Engel
    Dale J. Hedges
    Prescott L. Deininger
    First Published March 9, 2009
  - High-resolution DNA-binding specificity analysis of yeast transcription factors
    Cong Zhu
    Kelsey J.R.P. Byers
    Rachel Patton McCord
    Zhenwei Shi
    Michael F. Berger
    Daniel E. Newburger Katrina Saulrieta Zachary Smith Mita V. Shah Mathangi Radhakrishnan Anthony A. Philippakis Yanhui Hu Federico De Masi Marcin Pacek
    ...[+9 authors]...,
    Andreas Rolfs
    Tal Murthy
    Joshua LaBaer
    Martha L. Bulyk
    First Published January 21, 2009
Letter
- - Common polymorphic transcript variation in human disease
    Hunter B. Fraser
    Xiaohui Xie
    First Published February 2, 2009
  - mtDNA mutation pattern in tumors and human evolution are shaped by similar selective constraints
    Ilia Zhidkov
    Erez A. Livneh
    Eitan Rubin
    Dan Mishmar
    First Published February 10, 2009
  - HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination
    Martin I. Sigurdsson
    Albert V. Smith
    Hans T. Bjornsson
    Jon J. Jonsson
    First Published January 21, 2009
  - Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns
    Michael P. Schnetz
    Cynthia F. Bartels
    Kuntal Shastri
    Dheepa Balasubramanian
    Gabriel E. Zentner
    Ravishankar Balaji Xiaodong Zhang Lingyun Song
    ...[+3 authors]...,
    Zhenghe Wang
    Thomas LaFramboise
    Gregory E. Crawford
    Peter C. Scacheri
    First Published February 27, 2009
  - Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard
    Nicolas Di-Poï
    Juan I. Montoya-Burgos
    Denis Duboule
    First Published February 18, 2009
  - The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion
    Angela Taddei
    Griet Van Houwe
    Shigeki Nagai
    Ionas Erb
    Erik van Nimwegen
    First Published January 29, 2009
  - Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
    Stephen A. James
    Michael J.T. O'Kelly
    David M. Carter
    Robert P. Davey
    Alexander van Oudenaarden
    First Published January 13, 2009
  - Global diversity in the human salivary microbiome
    Ivan Nasidze
    Jing Li
    Dominique Quinque
    Kun Tang
    Mark Stoneking
    First Published February 27, 2009
Methods
- - A transcription factor affinity-based code for mammalian transcription initiation
    Molly Megraw
    Fernando Pereira
    Shane T. Jensen
    Uwe Ohler
    Artemis G. Hatzigeorgiou
    First Published January 13, 2009
Resource
- - Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
    LaDeana W. Hillier
    Valerie Reinke
    Philip Green
    Martin Hirst
    Marco A. Marra
    First Published January 30, 2009
  - A piggyBac transposon-based genome-wide library of insertionally mutated Blm-deficient murine ES cells
    Wei Wang
    Allan Bradley
    Yue Huang
    First Published February 20, 2009
  - HistoneHits: A database for histone mutations and their phenotypes
    Hailiang Huang
    Alexandra M. Maertens
    Edel M. Hyland
    Junbiao Dai
    Anne Norris
    First Published February 13, 2009
  - Multiple whole-genome alignments without a reference organism
    Inna Dubchak
    Alexander Poliakov
    Andrey Kislyuk
    Michael Brudno
    First Published January 28, 2009
Errata
- - Erratum
    First Published April 1, 2009

Table of Contents

Volume 19, Issue 4 | April 2009

Next-Generation DNA Sequencing/Review

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

Article

Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing

Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die?

High-resolution DNA-binding specificity analysis of yeast transcription factors

Letter

Common polymorphic transcript variation in human disease

mtDNA mutation pattern in tumors and human evolution are shaped by similar selective constraints

HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination

Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns

Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard

The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion

Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing

Global diversity in the human salivary microbiome

Methods

A transcription factor affinity-based code for mammalian transcription initiation

Resource

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

A piggyBac transposon-based genome-wide library of insertionally mutated Blm-deficient murine ES cells

HistoneHits: A database for histone mutations and their phenotypes

Multiple whole-genome alignments without a reference organism

Errata

Erratum

Table of Contents

Volume 19, Issue 4 | April 2009

Share this issue

Next-Generation DNA Sequencing/Review

Article

Letter

Methods

Resource

Errata