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  Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

  • Ines Hellmann,
  • Yuan Mang,
  • Zhiping Gu,
  • Peter Li,
  • Francisco M. de la Vega,
  • Andrew G. Clark,
  • and Rasmus Nielsen

  Genome Res. July 2008 18: 1020-1029; Published in Advance April 14, 2008, doi:10.1101/gr.074187.107
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  Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions

  • Stefan Kirsch,
  • Claudia Münch,
  • Zhaoshi Jiang,
  • Ze Cheng,
  • Lin Chen,
  • Christiane Batz,
  • Evan E. Eichler,
  • and Werner Schempp

  Genome Res. July 2008 18: 1030-1042; Published in Advance April 29, 2008, doi:10.1101/gr.076711.108
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  A diversity profile of the human skin microbiota

  • Elizabeth A. Grice,
  • Heidi H. Kong,
  • Gabriel Renaud,
  • Alice C. Young,
  • Gerard G. Bouffard,
  • Robert W. Blakesley,
  • Tyra G. Wolfsberg,
  • Maria L. Turner,
  • and Julia A. Segre

  Genome Res. July 2008 18: 1043-1050; Published in Advance May 23, 2008, doi:10.1101/gr.075549.107
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  A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

  • Anton Valouev,
  • Jeffrey Ichikawa,
  • Thaisan Tonthat,
  • Jeremy Stuart,
  • Swati Ranade,
  • Heather Peckham,
  • Kathy Zeng,
  • Joel A. Malek,
  • Gina Costa,
  • Kevin McKernan,
  • Arend Sidow,
  • Andrew Fire,
  • and Steven M. Johnson

  Genome Res. July 2008 18: 1051-1063; Published in Advance May 13, 2008, doi:10.1101/gr.076463.108
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  A high-resolution map of nucleosome positioning on a fission yeast centromere

  • Jun S. Song,
  • Xingkun Liu,
  • X. Shirley Liu,
  • and Xiangwei He

  Genome Res. July 2008 18: 1064-1072; Published in Advance April 14, 2008, doi:10.1101/gr.075374.107
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  A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

  • Travis N. Mavrich,
  • Ilya P. Ioshikhes,
  • Bryan J. Venters,
  • Cizhong Jiang,
  • Lynn P. Tomsho,
  • Ji Qi,
  • Stephan C. Schuster,
  • Istvan Albert,
  • and B. Franklin Pugh

  Genome Res. July 2008 18: 1073-1083; Published in Advance June 12, 2008, doi:10.1101/gr.078261.108
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  Two strategies for gene regulation by promoter nucleosomes

  • Itay Tirosh and
  • Naama Barkai

  Genome Res. July 2008 18: 1084-1091; Published in Advance April 30, 2008, doi:10.1101/gr.076059.108
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  The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast

  • Gabriel Musso,
  • Michael Costanzo,
  • ManQin Huangfu,
  • Andrew M. Smith,
  • Jadine Paw,
  • Bryan-Joseph San Luis,
  • Charles Boone,
  • Guri Giaever,
  • Corey Nislow,
  • Andrew Emili,
  • and Zhaolei Zhang

  Genome Res. July 2008 18: 1092-1099; Published in Advance May 7, 2008, doi:10.1101/gr.076174.108
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  The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  • Linda Z. Holland,
  • Ricard Albalat,
  • Kaoru Azumi,
  • Èlia Benito-Gutiérrez,
  • Matthew J. Blow,
  • Marianne Bronner-Fraser,
  • Frederic Brunet,
  • Thomas Butts,
  • Simona Candiani,
  • Larry J. Dishaw,
  • David E.K. Ferrier,
  • Jordi Garcia-Fernàndez,
  • Jeremy J. Gibson-Brown,
  • Carmela Gissi,
  • Adam Godzik,
  • Finn Hallböök,
  • Dan Hirose,
  • Kazuyoshi Hosomichi,
  • Tetsuro Ikuta,
  • Hidetoshi Inoko,
  • Masanori Kasahara,
  • Jun Kasamatsu,
  • Takeshi Kawashima,
  • Ayuko Kimura,
  • Masaaki Kobayashi,
  • Zbynek Kozmik,
  • Kaoru Kubokawa,
  • Vincent Laudet,
  • Gary W. Litman,
  • Alice C. McHardy,
  • Daniel Meulemans,
  • Masaru Nonaka,
  • Robert P. Olinski,
  • Zeev Pancer,
  • Len A. Pennacchio,
  • Mario Pestarino,
  • Jonathan P. Rast,
  • Isidore Rigoutsos,
  • Marc Robinson-Rechavi,
  • Graeme Roch,
  • Hidetoshi Saiga,
  • Yasunori Sasakura,
  • Masanobu Satake,
  • Yutaka Satou,
  • Michael Schubert,
  • Nancy Sherwood,
  • Takashi Shiina,
  • Naohito Takatori,
  • Javier Tello,
  • Pavel Vopalensky,
  • Shuichi Wada,
  • Anlong Xu,
  • Yuzhen Ye,
  • Keita Yoshida,
  • Fumiko Yoshizaki,
  • Jr-Kai Yu,
  • Qing Zhang,
  • Christian M. Zmasek,
  • Pieter J. de Jong,
  • Kazutoyo Osoegawa,
  • Nicholas H. Putnam,
  • Daniel S. Rokhsar,
  • Noriyuki Satoh,
  • and Peter W.H. Holland

  Genome Res. July 2008 18: 1100-1111; Published in Advance June 18, 2008, doi:10.1101/gr.073676.107
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  Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity

  • Shengfeng Huang,
  • Shaochun Yuan,
  • Lei Guo,
  • Yanhong Yu,
  • Jun Li,
  • Tao Wu,
  • Tong Liu,
  • Manyi Yang,
  • Kui Wu,
  • Huiling Liu,
  • Jin Ge,
  • Yingcai Yu,
  • Huiqing Huang,
  • Meiling Dong,
  • Cuiling Yu,
  • Shangwu Chen,
  • and Anlong Xu

  Genome Res. July 2008 18: 1112-1126; Published in Advance June 18, 2008, doi:10.1101/gr.069674.107
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  Insights from the amphioxus genome on the origin of vertebrate neural crest

  • Jr-Kai Yu,
  • Daniel Meulemans,
  • Sonja J. McKeown,
  • and Marianne Bronner-Fraser

  Genome Res. July 2008 18: 1127-1132; Published in Advance June 18, 2008, doi:10.1101/gr.076208.108
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