Volume 18, Issue 7 | July 2008

REVIEW
- - The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases
    Karen Usdin
    First Published July 1, 2008
LETTERS
- - Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Ines Hellmann
    Yuan Mang
    Zhiping Gu
    Peter Li
    Francisco M. de la Vega
    First Published April 14, 2008
  - Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
    Stefan Kirsch
    Claudia Münch
    Zhaoshi Jiang
    Ze Cheng
    Lin Chen
    First Published April 29, 2008
  - A diversity profile of the human skin microbiota
    Elizabeth A. Grice
    Heidi H. Kong
    Gabriel Renaud
    Alice C. Young
    Gerard G. Bouffard
    First Published May 23, 2008
  - A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Anton Valouev
    Jeffrey Ichikawa
    Thaisan Tonthat
    Jeremy Stuart
    Swati Ranade
    Heather Peckham Kathy Zeng Joel A. Malek Gina Costa
    ...[+4 authors]...,
    Kevin McKernan
    Arend Sidow
    Andrew Fire
    Steven M. Johnson
    First Published May 13, 2008
  - A high-resolution map of nucleosome positioning on a fission yeast centromere
    Jun S. Song
    Xingkun Liu
    X. Shirley Liu
    Xiangwei He
    First Published April 14, 2008
  - A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    Travis N. Mavrich
    Ilya P. Ioshikhes
    Bryan J. Venters
    Cizhong Jiang
    Lynn P. Tomsho
    First Published June 12, 2008
  - Two strategies for gene regulation by promoter nucleosomes
    Itay Tirosh
    Naama Barkai
    First Published April 30, 2008
  - The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast
    Gabriel Musso
    Michael Costanzo
    ManQin Huangfu
    Andrew M. Smith
    Jadine Paw
    Bryan-Joseph San Luis Charles Boone
    ...[+2 authors]...,
    Guri Giaever
    Corey Nislow
    Andrew Emili
    Zhaolei Zhang
    First Published May 7, 2008
  - The amphioxus genome illuminates vertebrate origins and cephalochordate biology
    Linda Z. Holland
    Ricard Albalat
    Kaoru Azumi
    Èlia Benito-Gutiérrez
    Matthew J. Blow
    Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
    ...[+55 authors]...,
    Nicholas H. Putnam
    Daniel S. Rokhsar
    Noriyuki Satoh
    Peter W.H. Holland
    First Published June 18, 2008
  - Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
    Shengfeng Huang
    Shaochun Yuan
    Lei Guo
    Yanhong Yu
    Jun Li
    Tao Wu Tong Liu Manyi Yang Kui Wu Huiling Liu Jin Ge Yingcai Yu Huiqing Huang
    ...[+8 authors]...,
    Meiling Dong
    Cuiling Yu
    Shangwu Chen
    Anlong Xu
    First Published June 18, 2008
  - Insights from the amphioxus genome on the origin of vertebrate neural crest
    Jr-Kai Yu
    Daniel Meulemans
    Sonja J. McKeown
    Marianne Bronner-Fraser
    First Published June 18, 2008
Methods
- - Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
    Nitin Gupta
    Jamal Benhamida
    Vipul Bhargava
    Daniel Goodman
    Elisabeth Kain
    Ian Kerman Ngan Nguyen Noah Ollikainen Jesse Rodriguez Jian Wang Mary S. Lipton
    ...[+6 authors]...,
    Margaret Romine
    Vineet Bafna
    Richard D. Smith
    Pavel A. Pevzner
    First Published April 21, 2008
  - Mapping translocation breakpoints by next-generation sequencing
    Wei Chen
    Vera Kalscheuer
    Andreas Tzschach
    Corinna Menzel
    Reinhard Ullmann
    Marcel Holger Schulz Fikret Erdogan Na Li Zofia Kijas Ger Arkesteijn Isidora Lopez Pajares Margret Goetz-Sothmann Uwe Heinrich Imma Rost Andreas Dufke
    ...[+10 authors]...,
    Ute Grasshoff
    Birgitta Glaeser
    Martin Vingron
    H. Hilger Ropers
    First Published March 7, 2008
  - Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network
    Ivan Iossifov
    Tian Zheng
    Miron Baron
    T. Conrad Gilliam
    Andrey Rzhetsky
    First Published April 16, 2008
  - Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Yao-Ting Huang
    Feng-Chi Chen
    Chiuan-Jung Chen
    Hsin-Liang Chen
    Trees-Juen Chuang
    First Published March 27, 2008
  - A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations
    Vijay K. Tiwari
    Leslie Cope
    Kelly M. McGarvey
    Joyce E. Ohm
    Stephen B. Baylin
    First Published May 23, 2008
RESOURCE
- - Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
    Chaim Linhart
    Yonit Halperin
    Ron Shamir
    First Published April 14, 2008

Table of Contents

Volume 18, Issue 7 | July 2008

REVIEW

The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases

LETTERS

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions

A diversity profile of the human skin microbiota

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

A high-resolution map of nucleosome positioning on a fission yeast centromere

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

Two strategies for gene regulation by promoter nucleosomes

The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity

Insights from the amphioxus genome on the origin of vertebrate neural crest

Methods

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Mapping translocation breakpoints by next-generation sequencing

Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network

Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons

A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations

RESOURCE

Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets

Table of Contents

Volume 18, Issue 7 | July 2008

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