Volume 18, Issue 3 | March 2008

REVIEW
- - Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
    Victoria P. Belancio
    Dale J. Hedges
    Prescott Deininger
    First Published February 6, 2008
LETTERS
- - Chromodomains direct integration of retrotransposons to heterochromatin
    Xiang Gao
    Yi Hou
    Hirotaka Ebina
    Henry L. Levin
    Daniel F. Voytas
    First Published February 6, 2008
  - Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions
    Eva Darai-Ramqvist
    Agneta Sandlund
    Stefan Müller
    George Klein
    Stefan Imreh
    First Published January 29, 2008
  - Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
    Alvaro Rada-Iglesias
    Adam Ameur
    Philipp Kapranov
    Stefan Enroth
    Jan Komorowski
    First Published January 29, 2008
  - Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    David S. Johnson
    Wei Li
    D. Benjamin Gordon
    Arindam Bhattacharjee
    Bo Curry
    Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
    ...[+39 authors]...,
    Kevin Struhl
    Richard M. Myers
    Jason D. Lieb
    X. Shirley Liu
    First Published February 7, 2008
  - MicroRNA–target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis
    Zhongmin Tian
    Andrew S. Greene
    Jennifer L. Pietrusz
    Isaac R. Matus
    Mingyu Liang
    First Published January 29, 2008
  - Evolutionary dynamics of nematode operons: Easy come, slow go
    Wenfeng Qian
    Jianzhi Zhang
    First Published January 24, 2008
  - Genome structure and emerging evidence of an incipient sex chromosome in Populus
    Tongming Yin
    Stephen P. DiFazio
    Lee E. Gunter
    Xinye Zhang
    Michell M. Sewell
    Scott A. Woolbright Gery J. Allan
    ...[+2 authors]...,
    Collin T. Kelleher
    Carl J. Douglas
    Mingxiu Wang
    Gerald A. Tuskan
    First Published February 6, 2008
  - Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species
    Christel Cazalet
    Sophie Jarraud
    Yad Ghavi-Helm
    Frank Kunst
    Philippe Glaser
    First Published February 6, 2008
  - The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota
    Tomoyuki Kosaka
    Souichiro Kato
    Takefumi Shimoyama
    Shunichi Ishii
    Takashi Abe
    First Published January 24, 2008
  - Evolution of protein domain promiscuity in eukaryotes
    Malay Kumar Basu
    Liran Carmel
    Igor B. Rogozin
    Eugene V. Koonin
    First Published January 29, 2008
  - Coevolution of gene families in prokaryotes
    Otto X. Cordero
    Berend Snel
    Paulien Hogeweg
    First Published January 29, 2008
Methods
- - Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion
    Jon Reinders
    Céline Delucinge Vivier
    Grégory Theiler
    Didier Chollet
    Patrick Descombes
    First Published January 24, 2008
  - Systematic functional characterization of cis-regulatory motifs in human core promoters
    Saurabh Sinha
    Adam S. Adler
    Yair Field
    Howard Y. Chang
    Eran Segal
    First Published February 6, 2008
RESOURCES
- - Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs
    Julie E. Horvath
    David W. Weisrock
    Stephanie L. Embry
    Isabella Fiorentino
    James P. Balhoff
    First Published February 1, 2008
  - Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits
    Toyoyuki Takada
    Akihiko Mita
    Akiteru Maeno
    Takahiro Sakai
    Hiroshi Shitara
    First Published February 6, 2008
  - Mouse consomic strains: Exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies
    Sona Gregorová
    Petr Divina
    Radka Storchova
    Zdenek Trachtulec
    Vladana Fotopulosova
    First Published February 6, 2008
ERRATUM
- - Errata
    First Published February 29, 2008

Table of Contents

Volume 18, Issue 3 | March 2008

REVIEW

Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health

LETTERS

Chromodomains direct integration of retrotransposons to heterochromatin

Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

MicroRNA–target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis

Evolutionary dynamics of nematode operons: Easy come, slow go

Genome structure and emerging evidence of an incipient sex chromosome in Populus

Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species

The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota

Evolution of protein domain promiscuity in eukaryotes

Coevolution of gene families in prokaryotes

Methods

Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion

Systematic functional characterization of cis-regulatory motifs in human core promoters

RESOURCES

Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs

Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits

Mouse consomic strains: Exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies

ERRATUM

Errata

Table of Contents

Volume 18, Issue 3 | March 2008

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REVIEW

LETTERS

Methods

RESOURCES

ERRATUM