Volume 18, Issue 11 | November 2008

Forum
- - Don’t throw the baby out with the bathwater: Enabling a bottom-up approach in genome-wide association studies
    Sean E. McGuire
    Amy L. McGuire
    First Published October 30, 2008
REVIEW
- - Defensins and the dynamic genome: What we can learn from structural variation at human chromosome band 8p23.1
    Edward J. Hollox
    John C.K. Barber
    Anthony J. Brookes
    John A.L. Armour
    First Published October 30, 2008
ARTICLE
- - Copy number variation and evolution in humans and chimpanzees
    George H. Perry
    Fengtang Yang
    Tomas Marques-Bonet
    Carly Murphy
    Tomas Fitzgerald
    Arthur S. Lee Courtney Hyland Anne C. Stone Matthew E. Hurles Chris Tyler-Smith
    ...[+5 authors]...,
    Evan E. Eichler
    Nigel P. Carter
    Charles Lee
    Richard Redon
    First Published September 4, 2008
LETTERS
- - Reduced purifying selection prevails over positive selection in human copy number variant evolution
    Duc-Quang Nguyen
    Caleb Webber
    Jayne Hehir-Kwa
    Rolph Pfundt
    Joris Veltman
    First Published August 7, 2008
  - Copy number variation at the breakpoint region of isochromosome 17q
    Claudia M.B. Carvalho
    James R. Lupski
    First Published August 19, 2008
  - Unexpected complexity at breakpoint junctions in phenotypically normal individuals and mechanisms involved in generating balanced translocations t(1;22)(p36;q13)
    Marzena Gajecka
    Andrew J. Gentles
    Albert Tsai
    David Chitayat
    Katherine L. Mackay
    First Published September 2, 2008
  - Dispensability of mammalian DNA
    Cory McLean
    Gill Bejerano
    First Published October 2, 2008
  - Evolution of the mammalian transcription factor binding repertoire via transposable elements
    Guillaume Bourque
    Bernard Leong
    Vinsensius B. Vega
    Xi Chen
    Yen Ling Lee
    Kandhadayar G. Srinivasan Joon-Lin Chew
    ...[+2 authors]...,
    Yijun Ruan
    Chia-Lin Wei
    Huck Hui Ng
    Edison T. Liu
    First Published August 5, 2008
  - E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
    Alina Rabinovich
    Victor X. Jin
    Roman Rabinovich
    Xiaoqin Xu
    Peggy J. Farnham
    First Published October 3, 2008
  - Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex
    Diego Ottaviani
    Elliott Lever
    Richard Mitter
    Tania Jones
    Tim Forshew
    Rossitza Christova Eleni M. Tomazou Vardhman K. Rakyan Stephen A. Krawetz
    ...[+4 authors]...,
    Adrian E. Platts
    Badmavady Segarane
    Stephan Beck
    Denise Sheer
    First Published October 10, 2008
  - In-depth characterization of the microRNA transcriptome in a leukemia progression model
    Florian Kuchenbauer
    Ryan D. Morin
    Bob Argiropoulos
    Oleh I. Petriv
    Malachi Griffith
    Michael Heuser Eric Yung Jessica Piper Allen Delaney Anna-Liisa Prabhu Yongjun Zhao Helen McDonald Thomas Zeng
    ...[+8 authors]...,
    Martin Hirst
    Carl L. Hansen
    Marco A. Marra
    R. Keith Humphries
    First Published October 10, 2008
  - Transcription of foreign DNA in Escherichia coli
    René L. Warren
    John D. Freeman
    Roger C. Levesque
    Duane E. Smailus
    Stephane Flibotte
    First Published August 13, 2008
Methods
- - Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification
    Bo Wen
    Hao Wu
    Hans Bjornsson
    Roland D. Green
    Rafael Irizarry
    First Published September 16, 2008
  - Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
    Benedict Paten
    Javier Herrero
    Kathryn Beal
    Stephen Fitzgerald
    Ewan Birney
    First Published October 10, 2008
  - Genome-wide nucleotide-level mammalian ancestor reconstruction
    Benedict Paten
    Javier Herrero
    Stephen Fitzgerald
    Kathryn Beal
    Paul Flicek
    First Published October 10, 2008
  - Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes
    Katherine Elena Varley
    Robi David Mitra
    First Published October 10, 2008
RESOURCE
- - Mapping short DNA sequencing reads and calling variants using mapping quality scores
    Heng Li
    Jue Ruan
    Richard Durbin
    First Published August 19, 2008
ERRATUM
- - Erratum
    First Published October 30, 2008

Table of Contents

Volume 18, Issue 11 | November 2008

Forum

Don’t throw the baby out with the bathwater: Enabling a bottom-up approach in genome-wide association studies

REVIEW

Defensins and the dynamic genome: What we can learn from structural variation at human chromosome band 8p23.1

ARTICLE

Copy number variation and evolution in humans and chimpanzees

LETTERS

Reduced purifying selection prevails over positive selection in human copy number variant evolution

Copy number variation at the breakpoint region of isochromosome 17q

Unexpected complexity at breakpoint junctions in phenotypically normal individuals and mechanisms involved in generating balanced translocations t(1;22)(p36;q13)

Dispensability of mammalian DNA

Evolution of the mammalian transcription factor binding repertoire via transposable elements

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex

In-depth characterization of the microRNA transcriptome in a leukemia progression model

Transcription of foreign DNA in Escherichia coli

Methods

Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification

Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

Genome-wide nucleotide-level mammalian ancestor reconstruction

Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes

RESOURCE

Mapping short DNA sequencing reads and calling variants using mapping quality scores

ERRATUM

Erratum

Table of Contents

Volume 18, Issue 11 | November 2008

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REVIEW

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LETTERS

Methods

RESOURCE

ERRATUM