Volume 17, Issue 9 | September 2007

PERSPECTIVE
- - Raising the estimate of functional human sequences
    Michael Pheasant
    John S. Mattick
    First Published August 9, 2007
ARTICLES
- - Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
    Yoichiro Nakatani
    Hiroyuki Takeda
    Yuji Kohara
    Shinichi Morishita
    First Published July 25, 2007
  - Gene copy number variation spanning 60 million years of human and primate evolution
    Laura Dumas
    Young H. Kim
    Anis Karimpour-Fard
    Michael Cox
    Janet Hopkins
    First Published July 31, 2007
LETTERS
- - Human gene organization driven by the coordination of replication and transcription
    Maxime Huvet
    Samuel Nicolay
    Marie Touchon
    Benjamin Audit
    Yves d'Aubenton-Carafa
    First Published August 3, 2007
  - Domain-wide regulation of gene expression in the human genome
    Hinco J. Gierman
    Mireille H.G. Indemans
    Jan Koster
    Sandra Goetze
    Jurgen Seppen
    First Published August 10, 2007
  - Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution
    Graham R. Bignell
    Thomas Santarius
    Jessica C.M. Pole
    Adam P. Butler
    Janet Perry
    Erin Pleasance Chris Greenman Andrew Menzies Sheila Taylor Sarah Edkins Peter Campbell Michael Quail Bob Plumb Lucy Matthews Kirsten McLay Paul A.W. Edwards
    ...[+11 authors]...,
    Jane Rogers
    Richard Wooster
    P. Andrew Futreal
    Michael R. Stratton
    First Published August 3, 2007
  - A multidimensional analysis of genes mutated in breast and colorectal cancers
    Jimmy Lin
    Christine M. Gan
    Xiaosong Zhang
    Siân Jones
    Tobias Sjöblom
    Laura D. Wood D. Williams Parsons Nickolas Papadopoulos
    ...[+3 authors]...,
    Kenneth W. Kinzler
    Bert Vogelstein
    Giovanni Parmigiani
    Victor E. Velculescu
    First Published August 10, 2007
  - Direct linkage of mitochondrial genome variation to risk factors for type 2 diabetes in conplastic strains
    Michal Pravenec
    Masaya Hyakukoku
    Josef Houstek
    Vaclav Zidek
    Vladimir Landa
    Petr Mlejnek Ivan Miksik Kristyna Dudová-Mothejzikova Petr Pecina Marek Vrbacký Zdenek Drahota Alena Vojtiskova Tomas Mracek Ludmila Kazdova Olena Oliyarnyk Jiaming Wang
    ...[+11 authors]...,
    Christopher Ho
    Nathan Qi
    Ken Sugimoto
    Theodore Kurtz
    First Published August 10, 2007
  - Functional conservation of Rel binding sites in drosophilid genomes
    Richard R. Copley
    Maxim Totrov
    Jane Linnell
    Simon Field
    Jiannis Ragoussis
    First Published September 4, 2007
  - Genes under positive selection in Escherichia coli
    Lise Petersen
    Jonathan P. Bollback
    Matt Dimmic
    Melissa Hubisz
    Rasmus Nielsen
    First Published August 3, 2007
  - Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure
    Lucio Marcello
    J. David Barry
    First Published July 25, 2007
  - Unique genes in giant viruses: Regular substitution pattern and anomalously short size
    Hiroyuki Ogata
    Jean-Michel Claverie
    First Published July 25, 2007
Methods
- - Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
    Nitin Gupta
    Stephen Tanner
    Navdeep Jaitly
    Joshua N. Adkins
    Mary Lipton
    Robert Edwards Margaret Romine
    ...[+2 authors]...,
    Andrei Osterman
    Vineet Bafna
    Richard D. Smith
    Pavel A. Pevzner
    First Published August 9, 2007
  - Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development
    Daniel B. McClatchy
    Lujian Liao
    Sung Kyu Park
    John D. Venable
    John R. Yates
    First Published August 3, 2007
  - Conrad: Gene prediction using conditional random fields
    David DeCaprio
    Jade P. Vinson
    Matthew D. Pearson
    Philip Montgomery
    Matthew Doherty
    First Published August 9, 2007

Table of Contents

Volume 17, Issue 9 | September 2007

PERSPECTIVE

Raising the estimate of functional human sequences

ARTICLES

Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates

Gene copy number variation spanning 60 million years of human and primate evolution

LETTERS

Human gene organization driven by the coordination of replication and transcription

Domain-wide regulation of gene expression in the human genome

Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

A multidimensional analysis of genes mutated in breast and colorectal cancers

Direct linkage of mitochondrial genome variation to risk factors for type 2 diabetes in conplastic strains

Functional conservation of Rel binding sites in drosophilid genomes

Genes under positive selection in Escherichia coli

Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure

Unique genes in giant viruses: Regular substitution pattern and anomalously short size

Methods

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development

Conrad: Gene prediction using conditional random fields

Table of Contents

Volume 17, Issue 9 | September 2007

Share this issue

PERSPECTIVE

ARTICLES

LETTERS

Methods