Table of Contents

April 2005; 15 (4)

In This Issue

ARTICLES

  • The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

    • Francisco M. De La Vega,
    • Hadar Isaac,
    • Andrew Collins,
    • Charles R. Scafe,
    • Bjarni V. Halldórsson,
    • Xiaoping Su,
    • Ross A. Lippert,
    • Yu Wang,
    • Marion Laig-Webster,
    • Ryan T. Koehler,
    • Janet S. Ziegle,
    • Lewis T. Wogan,
    • Junko F. Stevens,
    • Kyle M. Leinen,
    • Sheri J. Olson,
    • Karl J. Guegler,
    • Xiaoqing You,
    • Lily H. Xu,
    • Heinz G. Hemken,
    • Francis Kalush,
    • Mitsuo Itakura,
    • Yi Zheng,
    • Guy de Thé,
    • Stephen J. O'Brien,
    • Andrew G. Clark,
    • Sorin Istrail,
    • Michael W. Hunkapiller,
    • Eugene G. Spier,
    • and Dennis A. Gilbert
    Genome Res. April 2005 15: 454-462; Published in Advance March 21, 2005, doi:10.1101/gr.3241705
    OPEN ACCESS ARTICLE

  • Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized

    • Hidenori Kiyosawa,
    • Nathan Mise,
    • Shigeru Iwase,
    • Yoshihide Hayashizaki,
    • and Kuniya Abe
    Genome Res. April 2005 15: 463-474; Published in Advance March 21, 2005, doi:10.1101/gr.3155905

  • Analysis of the floral transcriptome uncovers new regulators of organ determination and gene families related to flower organ differentiation in Gerbera hybrida (Asteraceae)

    • Roosa A.E. Laitinen,
    • Juha Immanen,
    • Petri Auvinen,
    • Stephen Rudd,
    • Edward Alatalo,
    • Lars Paulin,
    • Miia Ainasoja,
    • Mika Kotilainen,
    • Satu Koskela,
    • Teemu H. Teeri,
    • and Paula Elomaa
    Genome Res. April 2005 15: 475-486; Published in Advance March 21, 2005, doi:10.1101/gr.3043705

LETTERS

  • Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis

    • Mulu Ayele,
    • Brian J. Haas,
    • Nikhil Kumar,
    • Hank Wu,
    • Yongli Xiao,
    • Susan Van Aken,
    • Teresa R. Utterback,
    • Jennifer R. Wortman,
    • Owen R. White,
    • and Christopher D. Town
    Genome Res. April 2005 15: 487-495; doi:10.1101/gr.3176505

  • Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

    • Manpreet S. Katari,
    • Vivekanand Balija,
    • Richard K. Wilson,
    • Robert A. Martienssen,
    • and W. Richard McCombie
    Genome Res. April 2005 15: 496-504; doi:10.1101/gr.3239105

  • Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana

    • Krithika Yogeeswaran,
    • Amy Frary,
    • Thomas L. York,
    • Alison Amenta,
    • Andrew H. Lesser,
    • June B. Nasrallah,
    • Steven D. Tanksley,
    • and Mikhail E. Nasrallah
    Genome Res. April 2005 15: 505-515; doi:10.1101/gr.3436305

  • Chromosome triplication found across the tribe Brassiceae

    • Martin A. Lysak,
    • Marcus A. Koch,
    • Ales Pecinka,
    • and Ingo Schubert
    Genome Res. April 2005 15: 516-525; Published in Advance March 21, 2005, doi:10.1101/gr.3531105

  • Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels

    • Edwige Isidore,
    • Beatrice Scherrer,
    • Boulos Chalhoub,
    • Catherine Feuillet,
    • and Beat Keller
    Genome Res. April 2005 15: 526-536; doi:10.1101/gr.3131005

  • Functional insights from the distribution and role of homopeptide repeat-containing proteins

    • Noel G. Faux,
    • Stephen P. Bottomley,
    • Arthur M. Lesk,
    • James A. Irving,
    • John R. Morrison,
    • Maria Garcia de la Banda,
    • and James C. Whisstock
    Genome Res. April 2005 15: 537-551; doi:10.1101/gr.3096505

  • Novel specificities emerge by stepwise duplication of functional modules

    • José B. Pereira-Leal and
    • Sarah A. Teichmann
    Genome Res. April 2005 15: 552-559; doi:10.1101/gr.3102105

Methods

  • Forcing interactions as a genetic screen to identify proteins that exert a defined activity

    • Michael DeVit,
    • Paul J. Cullen,
    • Margaret Branson,
    • George F. Sprague, Jr.,
    • and Stanley Fields
    Genome Res. April 2005 15: 560-565; doi:10.1101/gr.3259905

  • ECgene: Genome-based EST clustering and gene modeling for alternative splicing

    • Namshin Kim,
    • Seokmin Shin,
    • and Sanghyuk Lee
    Genome Res. April 2005 15: 566-576; doi:10.1101/gr.3030405

RESOURCES

  • Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

    • Chaochun Wei,
    • Philippe Lamesch,
    • Manimozhiyan Arumugam,
    • Jennifer Rosenberg,
    • Ping Hu,
    • Marc Vidal,
    • and Michael R. Brent
    Genome Res. April 2005 15: 577-582; doi:10.1101/gr.3329005

  • Construction of a mini-Tn5-luxCDABE mutant library in Pseudomonas aeruginosa PAO1: A tool for identifying differentially regulated genes

    • Shawn Lewenza,
    • Reza K. Falsafi,
    • Geoff Winsor,
    • W. James Gooderham,
    • Joseph B. McPhee,
    • Fiona S.L. Brinkman,
    • and Robert E.W. Hancock
    Genome Res. April 2005 15: 583-589; doi:10.1101/gr.3513905

  • CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models

    • Hiroyuki Kurata,
    • Kouichi Masaki,
    • Yoshiyuki Sumida,
    • and Rei Iwasaki
    Genome Res. April 2005 15: 590-600; doi:10.1101/gr.3463705

ERRATA

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This Issue

April 2005; 15 (4)
Cover
  1. In This Issue
  2. ARTICLES
  3. LETTERS
  4. Methods
  5. RESOURCES
  6. ERRATA

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