Table of Contents

May 2005; 15 (5)

ARTICLES

  • Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

    • Julius Halaschek-Wiener,
    • Jaswinder S. Khattra,
    • Sheldon McKay,
    • Anatoli Pouzyrev,
    • Jeff M. Stott,
    • George S. Yang,
    • Robert A. Holt,
    • Steven J.M. Jones,
    • Marco A. Marra,
    • Angela R. Brooks-Wilson,
    • and Donald L. Riddle
    Genome Res. May 2005 15: 603-615; Published in Advance April 18, 2005, doi:10.1101/gr.3274805

  • Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants

    • Christos Noutsos,
    • Erik Richly,
    • and Dario Leister
    Genome Res. May 2005 15: 616-628; doi:10.1101/gr.3788705

  • The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

    • Nicholas R. Thomson,
    • Corin Yeats,
    • Kenneth Bell,
    • Matthew T.G. Holden,
    • Stephen D. Bentley,
    • Morag Livingstone,
    • Ana M. Cerdeño-Tárraga,
    • Barbara Harris,
    • Jon Doggett,
    • Doug Ormond,
    • Karen Mungall,
    • Kay Clarke,
    • Theresa Feltwell,
    • Zahra Hance,
    • Mandy Sanders,
    • Michael A. Quail,
    • Claire Price,
    • Bart G. Barrell,
    • Julian Parkhill,
    • and David Longbottom
    Genome Res. May 2005 15: 629-640; Published in Advance April 18, 2005, doi:10.1101/gr.3684805

  • Retroviruses and yeast retrotransposons use overlapping sets of host genes

    • Becky Irwin,
    • Michael Aye,
    • Pierre Baldi,
    • Nadejda Beliakova-Bethell,
    • Henry Cheng,
    • Yimeng Dou,
    • Willy Liou,
    • and Suzanne Sandmeyer
    Genome Res. May 2005 15: 641-654; Published in Advance April 18, 2005, doi:10.1101/gr.3739005
    OPEN ACCESS ARTICLE

LETTERS

  • Under the genomic radar: The Stealth model of Alu amplification

    • Kyudong Han,
    • Jinchuan Xing,
    • Hui Wang,
    • Dale J. Hedges,
    • Randall K. Garber,
    • Richard Cordaux,
    • and Mark A. Batzer
    Genome Res. May 2005 15: 655-664; doi:10.1101/gr.3492605

  • Evolution of base-substitution gradients in primate mitochondrial genomes

    • Sameer Z. Raina,
    • Jeremiah J. Faith,
    • Todd R. Disotell,
    • Hervé Seligmann,
    • Caro-Beth Stewart,
    • and David D. Pollock
    Genome Res. May 2005 15: 665-673; doi:10.1101/gr.3128605

  • Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

    • Yoav Gilad,
    • Scott A. Rifkin,
    • Paul Bertone,
    • Mark Gerstein,
    • and Kevin P. White
    Genome Res. May 2005 15: 674-680; doi:10.1101/gr.3335705

  • Cis-acting expression quantitative trait loci in mice

    • Sudheer Doss,
    • Eric E. Schadt,
    • Thomas A. Drake,
    • and Aldons J. Lusis
    Genome Res. May 2005 15: 681-691; Published in Advance April 18, 2005, doi:10.1101/gr.3216905

  • Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex

    • Bárbara Negre,
    • Sònia Casillas,
    • Magali Suzanne,
    • Ernesto Sánchez-Herrero,
    • Michael Akam,
    • Michael Nefedov,
    • Antonio Barbadilla,
    • Pieter de Jong,
    • and Alfredo Ruiz
    Genome Res. May 2005 15: 692-700; doi:10.1101/gr.3468605

  • Identification of functional transcription factor binding sites using closely related Saccharomyces species

    • Scott W. Doniger,
    • Juyoung Huh,
    • and Justin C. Fay
    Genome Res. May 2005 15: 701-709; Published in Advance April 18, 2005, doi:10.1101/gr.3578205
    OPEN ACCESS ARTICLE

Methods

  • Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein–protein interactions and complexes

    • Etsuko Miyamoto-Sato,
    • Masamichi Ishizaka,
    • Kenichi Horisawa,
    • Seiji Tateyama,
    • Hideaki Takashima,
    • Shinichiro Fuse,
    • Kaori Sue,
    • Naoya Hirai,
    • Kazuyo Masuoka,
    • and Hiroshi Yanagawa
    Genome Res. May 2005 15: 710-717; doi:10.1101/gr.3510505
    OPEN ACCESS ARTICLE

  • Target-selected mutant screen by TILLING in Drosophila

    • Sylke Winkler,
    • Anja Schwabedissen,
    • Dana Backasch,
    • Christian Bökel,
    • Claudia Seidel,
    • Stefanie Bönisch,
    • Maximilian Fürthauer,
    • Antje Kuhrs,
    • Laura Cobreros,
    • Michael Brand,
    • and Marcos González-Gaitán
    Genome Res. May 2005 15: 718-723; doi:10.1101/gr.3721805

  • Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures

    • Georges Natsoulis,
    • Laurent El Ghaoui,
    • Gert R.G. Lanckriet,
    • Alexander M. Tolley,
    • Fabrice Leroy,
    • Shane Dunlea,
    • Barrett P. Eynon,
    • Cecelia I. Pearson,
    • Stuart Tugendreich,
    • and Kurt Jarnagin
    Genome Res. May 2005 15: 724-736; doi:10.1101/gr.2807605

RESOURCES

  • Exploring relationships and mining data with the UCSC Gene Sorter

    • W.J. Kent,
    • Fan Hsu,
    • Donna Karolchik,
    • Robert M. Kuhn,
    • Hiram Clawson,
    • Heather Trumbower,
    • and David Haussler
    Genome Res. May 2005 15: 737-741; doi:10.1101/gr.3694705

  • Begin at the beginning: Predicting genes with 5′ UTRs

    • Randall H. Brown,
    • Samuel S. Gross,
    • and Michael R. Brent
    Genome Res. May 2005 15: 742-747; doi:10.1101/gr.3696205

  • Genome-wide assembly and analysis of alternative transcripts in mouse

    • Alexei A. Sharov,
    • Dawood B. Dudekula,
    • and Minoru S.H. Ko
    Genome Res. May 2005 15: 748-754; doi:10.1101/gr.3269805
    OPEN ACCESS ARTICLE
|

This Issue

May 2005; 15 (5)
Cover
  1. ARTICLES
  2. LETTERS
  3. Methods
  4. RESOURCES

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. February 2026, 36 (2)
  1. Current Issue
  1. Alert me to new issues of Genome Research