Volume 15, Issue 2 | February 2005

ARTICLES
- - Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome
    Stefan Kirsch
    Birgit Weiß
    Tracie L. Miner
    Robert H. Waterston
    Royden A. Clark
    First Published January 14, 2005
  - Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence
    Chen-Shan Chin
    Jeffrey H. Chuang
    Hao Li
    First Published January 14, 2005
LETTERS
- - Gene conversion and evolution of Xq28 duplicons involved in recurring inversions causing severe hemophilia A
    Richard D. Bagnall
    Karen L. Ayres
    Peter M. Green
    Francesco Giannelli
    First Published February 1, 2005
  - A comparison of the human and chimpanzee olfactory receptor gene repertoires
    Yoav Gilad
    Orna Man
    Gustavo Glusman
    First Published February 1, 2005
  - Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs
    Janet M. Young
    Marijo Kambere
    Barbara J. Trask
    Robert P. Lane
    First Published January 14, 2005
  - A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns
    Jinghui Zhang
    Kent W. Hunter
    Michael Gandolph
    William L. Rowe
    Richard P. Finney
    First Published February 1, 2005
  - New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
    Anita G. Fernandez
    Kristin C. Gunsalus
    Jerry Huang
    Ling-Shiang Chuang
    Nancy Ying
    Hsiao-lan Liang Caroline Tang Aaron J. Schetter Charles Zegar Jean-François Rual
    ...[+5 authors]...,
    David E. Hill
    Valerie Reinke
    Marc Vidal
    Fabio Piano
    First Published February 1, 2005
  - Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species
    Tony Le Gall
    Pierre Darlu
    Patricia Escobar-Páramo
    Bertrand Picard
    Erick Denamur
    First Published February 1, 2005
Methods
- - Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
    Paul Hardenbol
    Fuli Yu
    John Belmont
    Jennifer MacKenzie
    Carsten Bruckner
    Tiffany Brundage Andrew Boudreau Steve Chow Jim Eberle Ayca Erbilgin Mat Falkowski Ron Fitzgerald Sy Ghose Oleg Iartchouk Maneesh Jain George Karlin-Neumann Xiuhua Lu Xin Miao Bridget Moore Martin Moorhead Eugeni Namsaraev Shiran Pasternak Eunice Prakash Karen Tran Zhiyong Wang
    ...[+20 authors]...,
    Hywel B. Jones
    Ronald W. Davis
    Thomas D. Willis
    Richard A. Gibbs
    First Published February 1, 2005
  - A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome
    Hui-Yun Wang
    Minjie Luo
    Irina V. Tereshchenko
    Danielle M. Frikker
    Xiangfeng Cui
    James Y. Li Guohong Hu Yi Chu Marco A. Azaro Yong Lin Li Shen Qifeng Yang
    ...[+7 authors]...,
    Manousos E. Kambouris
    Richeng Gao
    Weichung Shih
    Honghua Li
    First Published February 1, 2005
  - Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
    James Ronald
    Joshua M. Akey
    Jacqueline Whittle
    Erin N. Smith
    Gael Yvert
    First Published February 1, 2005
  - Pooled genomic indexing of rhesus macaque
    Aleksandar Milosavljevic
    Ronald A. Harris
    Erica J. Sodergren
    Andrew R. Jackson
    Ken J. Kalafus
    Anne Hodgson Andrew Cree Weilie Dai Miklos Csuros
    ...[+4 authors]...,
    Baoli Zhu
    Pieter J. de Jong
    George M. Weinstock
    Richard A. Gibbs
    First Published February 1, 2005
  - Mapping segmental and sequence variations among laboratory mice using BAC array CGH
    Antoine M. Snijders
    Norma J. Nowak
    Bing Huey
    Jane Fridlyand
    Sindy Law
    Jeffrey Conroy Taku Tokuyasu Kubilay Demir Readman Chiu Jian-Hua Mao Ajay N. Jain
    ...[+6 authors]...,
    Steven J.M. Jones
    Allan Balmain
    Daniel Pinkel
    Donna G. Albertson
    First Published February 1, 2005
  - Making connections between novel transcription factors and their DNA motifs
    Kai Tan
    Lee Ann McCue
    Gary D. Stormo
    First Published January 14, 2005
  - Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen
    Shawn Lewenza
    Jennifer L. Gardy
    Fiona S.L. Brinkman
    Robert E.W. Hancock
    First Published February 1, 2005
RESOURCE
- - ProbCons: Probabilistic consistency-based multiple sequence alignment
    Chuong B. Do
    Mahathi S.P. Mahabhashyam
    Michael Brudno
    Serafim Batzoglou
    First Published February 1, 2005

Table of Contents

Volume 15, Issue 2 | February 2005

ARTICLES

Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome

Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence

LETTERS

Gene conversion and evolution of Xq28 duplicons involved in recurring inversions causing severe hemophilia A

A comparison of the human and chimpanzee olfactory receptor gene repertoires

Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs

A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones

Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species

Methods

Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay

A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

Pooled genomic indexing of rhesus macaque

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

Making connections between novel transcription factors and their DNA motifs

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen

RESOURCE

ProbCons: Probabilistic consistency-based multiple sequence alignment

Table of Contents

Volume 15, Issue 2 | February 2005

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ARTICLES

LETTERS

Methods

RESOURCE