Volume 14, Issue 12 | December 2004

ARTICLES
- - A survey of RNA editing in human brain
    Matthew Blow
    P. Andrew Futreal
    Richard Wooster
    Michael R. Stratton
    First Published November 15, 2004
  - Extensive and breed-specific linkage disequilibrium in Canis familiaris
    Nathan B. Sutter
    Michael A. Eberle
    Heidi G. Parker
    Barbara J. Pullar
    Ewen F. Kirkness
    First Published November 15, 2004
  - Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
    James P. Noonan
    Jane Grimwood
    Joshua Danke
    Jeremy Schmutz
    Mark Dickson
    First Published November 15, 2004
LETTERS
- - Intraspecies sequence comparisons for annotating genomes
    Dario Boffelli
    Claire V. Weer
    Li Weng
    Keith D. Lewis
    Malak I. Shoukry
    First Published November 15, 2004
  - Reconstructing large regions of an ancestral mammalian genome in silico
    Mathieu Blanchette
    Eric D. Green
    Webb Miller
    David Haussler
    First Published December 1, 2004
  - The mouse genome: Experimental examination of gene predictions and transcriptional start sites
    Sujit Dike
    Vivekanand S. Balija
    Lidia U. Nascimento
    Zhenyu Xuan
    Jacqueline Ou
    Theresa Zutavern
    ...[+1 authors]...,
    Lance E. Palmer
    Greg Hannon
    Michael Q. Zhang
    W. Richard McCombie
    First Published December 1, 2004
  - Long-range comparison of human and mouse Sprr loci to identify conserved noncoding sequences involved in coordinate regulation
    Natalia Martin
    Satyakam Patel
    Julia A. Segre
    First Published December 1, 2004
  - Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence–SNP analysis
    Kuniya Abe
    Hideki Noguchi
    Keiko Tagawa
    Misako Yuzuriha
    Atsushi Toyoda
    Toshio Kojima Kiyoshi Ezawa Naruya Saitou
    ...[+3 authors]...,
    Masahira Hattori
    Yoshiyuki Sakaki
    Kazuo Moriwaki
    Toshihiko Shiroishi
    First Published December 1, 2004
  - Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
    David S. Johnson
    Brad Davidson
    Christopher D. Brown
    William C. Smith
    Arend Sidow
    First Published November 15, 2004
  - Novel transcription regulatory elements in Caenorhabditis elegans muscle genes
    Debraj GuhaThakurta
    Lawrence A. Schriefer
    Robert H. Waterston
    Gary D. Stormo
    First Published December 1, 2004
  - Computing prokaryotic gene ubiquity: Rescuing the core from extinction
    Robert L. Charlebois
    W. Ford Doolittle
    First Published December 1, 2004
Methods
- - Marking of specific sequences in double-stranded DNA molecules—SNP detection and direct observation
    Yasushi Shigemori
    Hirotaka Haruta
    Takao Okada
    Michio Oishi
    First Published December 1, 2004
  - MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues
    Omer Barad
    Eti Meiri
    Amir Avniel
    Ranit Aharonov
    Adi Barzilai
    Isaac Bentwich Uri Einav Shlomit Gilad Patrick Hurban Yael Karov Edward K. Lobenhofer Eilon Sharon
    ...[+7 authors]...,
    Yoel M. Shiboleth
    Marat Shtutman
    Zvi Bentwich
    Paz Einat
    First Published December 1, 2004
  - High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
    Christiane Honisch
    Anu Raghunathan
    Charles R. Cantor
    Bernhard Ø. Palsson
    Dirk van den Boom
    First Published December 1, 2004
RESOURCE
- - EAnnot: A genome annotation tool using experimental evidence
    Li Ding
    Aniko Sabo
    Nicolas Berkowicz
    Rekha R. Meyer
    Yoram Shotland
    First Published December 1, 2004
ERRATA
- - Correction for Volume 14, p. 2221
    First Published December 1, 2004
  - Correction for Volume 14, p. 1786
    First Published December 1, 2004
  - Correction for Volume 13, p. 875
    First Published December 1, 2004
  - Correction for Volume 14, p. 2279
    First Published December 1, 2004

Table of Contents

Volume 14, Issue 12 | December 2004

ARTICLES

A survey of RNA editing in human brain

Extensive and breed-specific linkage disequilibrium in Canis familiaris

Coelacanth genome sequence reveals the evolutionary history of vertebrate genes

LETTERS

Intraspecies sequence comparisons for annotating genomes

Reconstructing large regions of an ancestral mammalian genome in silico

The mouse genome: Experimental examination of gene predictions and transcriptional start sites

Long-range comparison of human and mouse Sprr loci to identify conserved noncoding sequences involved in coordinate regulation

Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence–SNP analysis

Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance

Novel transcription regulatory elements in Caenorhabditis elegans muscle genes

Computing prokaryotic gene ubiquity: Rescuing the core from extinction

Methods

Marking of specific sequences in double-stranded DNA molecules—SNP detection and direct observation

MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues

High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

RESOURCE

EAnnot: A genome annotation tool using experimental evidence

ERRATA

Correction for Volume 14, p. 2221

Correction for Volume 14, p. 1786

Correction for Volume 13, p. 875

Correction for Volume 14, p. 2279

Table of Contents

Volume 14, Issue 12 | December 2004

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ARTICLES

LETTERS

Methods

RESOURCE

ERRATA