Volume 13, Issue 4 | April 2003

ARTICLES
- - Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters
    Noël Ghanem
    Olga Jarinova
    Angel Amores
    Qiaoming Long
    Gary Hatch
    First Published April 1, 2003
  - Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp.
    Steven E. Massey
    Gabriela Moura
    Pedro Beltrão
    Ricardo Almeida
    James R. Garey
    First Published April 1, 2003
  - Identification of Novel Imprinted Genes in a Genome-Wide Screen for Maternal Methylation
    Rachel J. Smith
    Wendy Dean
    Galia Konfortova
    Gavin Kelsey
    First Published April 1, 2003
LETTERS
- - Microarray Analyses of Xylella fastidiosa Provide Evidence of Coordinated Transcription Control of Laterally Transferred Elements
    Luiz R. Nunes
    Yoko B. Rosato
    Nair H. Muto
    Giane M. Yanai
    Vivian S. da Silva
    Daniela B. Leite Edmilson R. Gonçalves Alessandra A. de Souza
    ...[+3 authors]...,
    Helvécio D. Coletta-Filho
    Marcos A. Machado
    Silvio A. Lopes
    Regina Costa de Oliveira
    First Published April 1, 2003
  - Homotypic Regulatory Clusters in Drosophila
    Alexander P. Lifanov
    Vsevolod J. Makeev
    Anna G. Nazina
    Dmitri A. Papatsenko
    First Published April 1, 2003
  - Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex
    Toyoyuki Takada
    Attila Kumánovics
    Claire Amadou
    Masayasu Yoshino
    Elsy P. Jones
    First Published April 1, 2003
  - Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite
    Yimin Wu
    Xiangyun Wang
    Xia Liu
    Yufeng Wang
    First Published April 1, 2003
  - Nonrandom Tripeptide Sequence Distributions at Protein Carboxyl Termini
    Gregory J. Gatto
    Jeremy M. Berg
    First Published April 1, 2003
  - Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry
    Manfred Kayser
    Silke Brauer
    Hiltrud Schädlich
    Mechthild Prinz
    Mark A. Batzer
    First Published April 1, 2003
METHODS
- - Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size
    Ben J. Hayes
    Peter M. Visscher
    Helen C. McPartlan
    Mike E. Goddard
    First Published March 12, 2003
  - Chromosomal Deletion Formation System Based on Tn5 Double Transposition: Use For Making Minimal Genomes and Essential Gene Analysis
    Igor Y. Goryshin
    Todd A. Naumann
    Jennifer Apodaca
    William S. Reznikoff
    First Published March 12, 2003
  - Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome
    Rongxiang Liu
    Richard C. McEachin
    David J. States
    First Published March 12, 2003
  - The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
    Evelyn Camon
    Michele Magrane
    Daniel Barrell
    David Binns
    Wolfgang Fleischmann
    Paul Kersey Nicola Mulder
    ...[+2 authors]...,
    Tom Oinn
    John Maslen
    Anthony Cox
    Rolf Apweiler
    First Published March 12, 2003
  - Ran's C-terminal, Basic Patch, and Nucleotide Exchange Mechanisms in Light of a Canonical Structure for Rab, Rho, Ras, and Ran GTPases
    Andrew F. Neuwald
    Natarajan Kannan
    Aleksandar Poleksic
    Naoya Hata
    Jun S. Liu
    First Published April 1, 2003
  - Informatics for Unveiling Hidden Genome Signatures
    Takashi Abe
    Shigehiko Kanaya
    Makoto Kinouchi
    Yuta Ichiba
    Tokio Kozuki
    First Published April 1, 2003
  - Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
    Yuval Kluger
    Ronen Basri
    Joseph T. Chang
    Mark Gerstein
    First Published April 1, 2003
  - Efficient High-Throughput Resequencing of Genomic DNA
    Raymond D. Miller
    Shenghui Duan
    Elizabeth G. Lovins
    Ellen F. Kloss
    Pui-Yan Kwok
    First Published March 12, 2003
  - LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
    Michael Brudno
    Chuong B. Do
    Gregory M. Cooper
    Michael F. Kim
    Eugene Davydov
    First Published March 12, 2003
RESOURCES
- - GALA, a Database for Genomic Sequence Alignments and Annotations
    Belinda Giardine
    Laura Elnitski
    Cathy Riemer
    Izabela Makalowska
    Scott Schwartz
    First Published April 1, 2003
  - The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
    Bhanu P. Chowdhary
    Terje Raudsepp
    Srinivas R. Kata
    Glenda Goh
    Lee V. Millon
    Veronica Allan François Piumi Gérard Guérin June Swinburne Matthew Binns Teri L. Lear Jim Mickelson
    ...[+7 authors]...,
    James Murray
    Douglas F. Antczak
    James E. Womack
    Loren C. Skow
    First Published April 1, 2003

Table of Contents

Volume 13, Issue 4 | April 2003

ARTICLES

Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters

Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp.

Identification of Novel Imprinted Genes in a Genome-Wide Screen for Maternal Methylation

LETTERS

Microarray Analyses of Xylella fastidiosa Provide Evidence of Coordinated Transcription Control of Laterally Transferred Elements

Homotypic Regulatory Clusters in Drosophila

Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex

Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite

Nonrandom Tripeptide Sequence Distributions at Protein Carboxyl Termini

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

METHODS

Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size

Chromosomal Deletion Formation System Based on Tn5 Double Transposition: Use For Making Minimal Genomes and Essential Gene Analysis

Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome

The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro

Ran's C-terminal, Basic Patch, and Nucleotide Exchange Mechanisms in Light of a Canonical Structure for Rab, Rho, Ras, and Ran GTPases

Informatics for Unveiling Hidden Genome Signatures

Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions

Efficient High-Throughput Resequencing of Genomic DNA

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

RESOURCES

GALA, a Database for Genomic Sequence Alignments and Annotations

The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes

Table of Contents

Volume 13, Issue 4 | April 2003

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ARTICLES

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METHODS

RESOURCES