Volume 13, Issue 12 | December 2003

ARTICLES
- - Identification and Characterization of Multi-Species Conserved Sequences
    Elliott H. Margulies
    Mathieu Blanchette
    David Haussler
    Eric D. Green
    First Published December 1, 2003
  - Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by Alu-Mediated Recombination Events During Evolution
    Melanie Babcock
    Adam Pavlicek
    Elizabeth Spiteri
    Catherine D. Kashork
    Ilya Ioshikhes
    First Published December 1, 2003
  - Does Recombination Shape the Distribution and Evolution of Tandemly Arrayed Genes (TAGs) in the Arabidopsis thaliana Genome?
    Liqing Zhang
    Brandon S. Gaut
    First Published December 1, 2003
LETTERS
- - Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
    Zhaolei Zhang
    Paul M. Harrison
    Yin Liu
    Mark Gerstein
    First Published December 1, 2003
  - A Genome-Wide Survey of Human Pseudogenes
    David Torrents
    Mikita Suyama
    Evgeny Zdobnov
    Peer Bork
    First Published December 1, 2003
  - From Gene Networks to Gene Function
    Thomas Schlitt
    Kimmo Palin
    Johan Rung
    Sabine Dietmann
    Michael Lappe
    First Published December 1, 2003
  - Comparative Genome Analysis of Vibrio vulnificus, a Marine Pathogen
    Chung-Yung Chen
    Keh-Ming Wu
    Yo-Cheng Chang
    Chuan-Hsiung Chang
    Hui-Chi Tsai
    Tsai-Lien Liao Yen-Ming Liu Hsiang-Ju Chen Arthur Bo-Ting Shen Jian-Chiuan Li Teh-Li Su
    ...[+6 authors]...,
    Chung-Ping Shao
    Chung-Te Lee
    Lien-I Hor
    Shih-Feng Tsai
    First Published December 1, 2003
  - Genomic Analysis in the sting-2 Quantitative Trait Locus for Defensive Behavior in the Honey Bee, Apis mellifera
    Neil F. Lobo
    Lucas Q. Ton
    Catherine A. Hill
    Christine Emore
    Jeanne Romero-Severson
    First Published December 1, 2003
  - Nucleotide Frequency Variation Across Human Genes
    Elizabeth Louie
    Jurg Ott
    Jacek Majewski
    First Published January 1, 2003
  - Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
    Francesca Chiaromonte
    Webb Miller
    Eric E. Bouhassira,
    First Published January 1, 2003
  - Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
    Rita Sousa-Nunes
    Amer Ahmed Rana
    Ross Kettleborough
    Joshua M. Brickman
    Melanie Clements
    Alistair Forrest Sean Grimmond
    ...[+2 authors]...,
    Philip Avner
    James C. Smith
    Sally L. Dunwoodie
    Rosa S.P. Beddington
    First Published January 1, 2003
  - Analysis of the Gene-Dense Major Histocompatibility Complex Class III Region and Its Comparison to Mouse
    Tao Xie
    Lee Rowen
    Begoña Aguado
    Mary Ellen Ahearn
    Anup Madan
    First Published December 1, 2003
  - Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification
    Xiang H-F. Zhang
    Katherine A. Heller
    Ilana Hefter
    Christina S. Leslie
    Lawrence A. Chasin
    First Published December 1, 2003
  - Molecular Correlates of Genes Exhibiting RNAi Phenotypes in Caenorhabditis elegans
    Asher D. Cutter
    Bret A. Payseur
    Tovah Salcedo
    Anne M. Estes
    Jeffrey M. Good
    Elizabeth Wood Thomas Hartl Heather Maughan
    ...[+3 authors]...,
    Jannine Strempel
    Baomin Wang
    Anthony C. Bryan
    Melissa Dellos
    First Published December 1, 2003
  - Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
    Pablo D. Rabinowicz
    Lance E. Palmer
    Bruce P. May
    Michael T. Hemann
    Scott W. Lowe
    First Published December 1, 2003
  - Hierarchy of Sequence-Dependent Features Associated With Prokaryotic Translation
    Gila Lithwick
    Hanah Margalit
    First Published December 1, 2003
  - The Clustered Olfactory Receptor Gene Family 262: Genomic Organization, Promotor Elements, and Interacting Transcription Factors
    Reiner Hoppe
    Henning Frank
    Heinz Breer
    Jörg Strotmann
    First Published December 1, 2003
  - Correlations Between Gene Expression and Gene Conservation in Fission Yeast
    Juan Mata
    Jürg Bähler
    First Published January 1, 2003
Methods
- - A Strategy for Constructing Large Protein Interaction Maps Using the Yeast Two-Hybrid System:Regulated Expression Arrays and Two-Phase Mating
    Jinhui Zhong
    Huamei Zhang
    Clement A. Stanyon
    Gerard Tromp
    Russell L. Finley
    First Published January 1, 2003
  - Efficient Target-Selected Mutagenesis in Zebrafish
    Erno Wienholds
    Freek van Eeden
    Marit Kosters
    Josine Mudde
    Ronald H.A. Plasterk
    First Published January 1, 2003
  - Toward a Functional Annotation of the Human Genome Using Artificial Transcription Factors
    Dong-ki Lee
    Jin Woo Park
    Youn-Jae Kim
    Jiwon Kim
    Yangsoon Lee
    First Published December 1, 2003
  - Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes
    Carola Burgtorf
    Pamela Kepper
    Margret Hoehe
    Carsten Schmitt
    Richard Reinhardt
    First Published December 1, 2003
RESOURCES
- - Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane
    André L. Vettore
    Felipe R. da Silva
    Edson L. Kemper
    Glaucia M. Souza
    Aline M. da Silva
    Maria Inês T. Ferro Flavio Henrique-Silva Éder A. Giglioti Manoel V.F. Lemos Luiz L. Coutinho Marina P. Nobrega Helaine Carrer Suzelei C. França Maurício Bacci Maria Helena S. Goldman Suely L. Gomes Luiz R. Nunes Luis E.A. Camargo Walter J. Siqueira Marie-Anne Van Sluys Otavio H. Thiemann Eiko E. Kuramae Roberto V. Santelli Celso L. Marino Maria L.P.N. Targon Jesus A. Ferro Henrique C.S. Silveira Danyelle C. Marini Eliana G.M. Lemos Claudia B. Monteiro-Vitorello José H.M. Tambor Dirce M. Carraro Patrícia G. Roberto Vanderlei G. Martins Gustavo H. Goldman Regina C. de Oliveira Daniela Truffi Carlos A. Colombo Magdalena Rossi Paula G. de Araujo Susana A. Sculaccio Aline Angella Marleide M.A. Lima Vicente E. de Rosa Fábio Siviero Virginia E. Coscrato Marcos A. Machado Laurent Grivet Sonia M.Z. Di Mauro Francisco G. Nobrega Carlos F.M. Menck Marilia D.V. Braga Guilherme P. Telles
    ...[+48 authors]...,
    Frank A.A. Cara
    Guilherme Pedrosa
    João Meidanis
    Paulo Arruda
    First Published January 1, 2003
  - Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters
    Albert J. Poustka
    Detlef Groth
    Steffen Hennig
    Sabine Thamm
    Andrew Cameron
    Alfred Beck
    ...[+1 authors]...,
    Richard Reinhardt
    Ralf Herwig
    Georgia Panopoulou
    Hans Lehrach
    First Published December 1, 2003
  - Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
    Melody S. Clark
    Yvonne J.K. Edwards
    Dan Peterson
    Sandra W. Clifton
    Amanda J. Thompson
    Masahide Sasaki Yutaka Suzuki Kiyoshi Kikuchi Shugo Watabe
    ...[+4 authors]...,
    Koichi Kawakami
    Sumio Sugano
    Greg Elgar
    Stephen L. Johnson
    First Published January 1, 2003
  - A BAC-Based Physical Map of the Chicken Genome
    Chengwei Ren
    Mi-Kyung Lee
    Bo Yan
    Kejiao Ding
    Bettye Cox
    First Published December 1, 2003
ERRATA
- - Correction for Volume 13, p. 2265
    First Published December 1, 2003
  - Correction for Volume 13, p. 1944
    First Published December 1, 2003

Table of Contents

Volume 13, Issue 12 | December 2003

ARTICLES

Identification and Characterization of Multi-Species Conserved Sequences

Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by Alu-Mediated Recombination Events During Evolution

Does Recombination Shape the Distribution and Evolution of Tandemly Arrayed Genes (TAGs) in the Arabidopsis thaliana Genome?

LETTERS

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome

A Genome-Wide Survey of Human Pseudogenes

From Gene Networks to Gene Function

Comparative Genome Analysis of Vibrio vulnificus, a Marine Pathogen

Genomic Analysis in the sting-2 Quantitative Trait Locus for Defensive Behavior in the Honey Bee, Apis mellifera

Nucleotide Frequency Variation Across Human Genes

Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels

Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection

Analysis of the Gene-Dense Major Histocompatibility Complex Class III Region and Its Comparison to Mouse

Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification

Molecular Correlates of Genes Exhibiting RNAi Phenotypes in Caenorhabditis elegans

Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals

Hierarchy of Sequence-Dependent Features Associated With Prokaryotic Translation

The Clustered Olfactory Receptor Gene Family 262: Genomic Organization, Promotor Elements, and Interacting Transcription Factors

Correlations Between Gene Expression and Gene Conservation in Fission Yeast

Methods

A Strategy for Constructing Large Protein Interaction Maps Using the Yeast Two-Hybrid System:Regulated Expression Arrays and Two-Phase Mating

Efficient Target-Selected Mutagenesis in Zebrafish

Toward a Functional Annotation of the Human Genome Using Artificial Transcription Factors

Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes

RESOURCES

Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane

Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters

Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation

A BAC-Based Physical Map of the Chicken Genome

ERRATA

Correction for Volume 13, p. 2265

Correction for Volume 13, p. 1944

Table of Contents

Volume 13, Issue 12 | December 2003

Share this issue

ARTICLES

LETTERS

Methods

RESOURCES

ERRATA