Volume 13, Issue 1 | January 2003

REVIEW
- - Cross-Species Sequence Comparisons: A Review of Methods and Available Resources
    Kelly A. Frazer
    Laura Elnitski
    Deanna M. Church
    Inna Dubchak
    Ross C. Hardison
    First Published January 1, 2003
ARTICLES
- - Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
    Ross C. Hardison
    Krishna M. Roskin
    Shan Yang
    Mark Diekhans
    W. James Kent
    Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
    ...[+9 authors]...,
    Arian Smit
    Webb Miller
    Francesca Chiaromonte
    David Haussler
    First Published January 1, 2003
  - Reevaluating Human Gene Annotation: A Second-Generation Analysis of Chromosome 22
    John E. Collins
    Melanie E. Goward
    Charlotte G. Cole
    Luc J. Smink
    Elizabeth J. Huckle
    First Published December 30, 2002
  - Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes
    Pavel Pevzner
    Glenn Tesler
    First Published December 30, 2002
LETTERS
- - Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
    Paul Flicek
    Evan Keibler
    Ping Hu
    Ian Korf
    Michael R. Brent
    First Published January 1, 2003
  - Pericentromeric Duplications in the Laboratory Mouse
    James W. Thomas
    Mary G. Schueler
    Tyrone J. Summers
    Robert W. Blakesley
    Jennifer C. McDowell
    Pamela J. Thomas Jacquelyn R. Idol Valerie V.B. Maduro Shih-Queen Lee-Lin Jeffrey W. Touchman
    ...[+5 authors]...,
    Gerard G. Bouffard
    Stephen M. Beckstrom-Sternberg
    NISC Comparative Sequencing Program
    Eric D. Green
    First Published December 30, 2002
  - Distinguishing Regulatory DNA From Neutral Sites
    Laura Elnitski
    Ross C. Hardison
    Jia Li
    Shan Yang
    Diana Kolbe
    Pallavi Eswara
    ...[+1 authors]...,
    Michael J. O'Connor
    Scott Schwartz
    Webb Miller
    Francesca Chiaromonte
    First Published January 1, 2003
  - Strategies and Tools for Whole-Genome Alignments
    Olivier Couronne
    Alexander Poliakov
    Nicolas Bray
    Tigran Ishkhanov
    Dmitriy Ryaboy
    First Published January 1, 2003
METHODS
- - The Phusion Assembler
    James C. Mullikin
    Zemin Ning
    First Published December 30, 2002
  - Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2
    David B. Jaffe
    Jonathan Butler
    Sante Gnerre
    Evan Mauceli
    Kerstin Lindblad-Toh
    First Published January 1, 2003
  - AVID: A Global Alignment Program
    Nick Bray
    Inna Dubchak
    Lior Pachter
    First Published December 30, 2002
  - Human–Mouse Alignments with BLASTZ
    Scott Schwartz
    W. James Kent
    Arian Smit
    Zheng Zhang
    Robert Baertsch
    First Published December 30, 2002
  - Comparative Gene Prediction in Human and Mouse
    Genı́s Parra
    Pankaj Agarwal
    Josep F. Abril
    Thomas Wiehe
    James W. Fickett
    First Published January 1, 2003
  - Multiple Cross and Inbred Strain Haplotype Mapping of Complex-Trait Candidate Genes
    Yeong-Gwon Park
    Robert Clifford
    Kenneth H. Buetow
    Kent W. Hunter
    First Published January 1, 2003
RESOURCE
- - The Comprehensive Mouse Radiation Hybrid Map Densely Cross-Referenced to the Recombination Map: A Tool to Support the Sequence Assemblies
    Lucy B. Rowe
    Mary E. Barter
    Jennifer A. Kelmenson
    Janan T. Eppig
    First Published December 30, 2002

Table of Contents

Volume 13, Issue 1 | January 2003

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REVIEW

ARTICLES

LETTERS

METHODS

RESOURCE