Volume 12, Issue 5 | May 2002

INSIGHT/OUTLOOK
- - What is Finished, and Why Does it Matter
    Elaine Mardis
    John McPherson
    Robert Martienssen
    Richard K. Wilson
    W. Richard McCombie
    First Published May 1, 2002
PERSPECTIVE
- - Biomedical Applications and Studies of Molecular Evolution: A Proposal for a Primate Genomic Library Resource
    Evan E. Eichler
    Pieter J. DeJong
    First Published May 1, 2002
COMMENTARY
- - Time for a Unified System of Mutation Description and Reporting: A Review of Locus-Specific Mutation Databases
    Mireille Claustres
    Ourania Horaitis
    Marijana Vanevski
    Richard G.H. Cotton
    First Published May 1, 2002
ARTICLES
- - A Complete Sequence of the T. tengcongensis Genome
    Qiyu Bao
    Yuqing Tian
    Wei Li
    Zuyuan Xu
    Zhenyu Xuan
    Songnian Hu Wei Dong Jian Yang Yanjiong Chen Yanfen Xue Yi Xu Xiaoqin Lai Li Huang Xiuzhu Dong Yanhe Ma Lunjiang Ling Huarong Tan
    ...[+12 authors]...,
    Runsheng Chen
    Jian Wang
    Jun Yu
    Huanming Yang
    First Published May 1, 2002
  - Identification of a Novel cis-Regulatory Element Involved in the Heat Shock Response in Caenorhabditis elegans Using Microarray Gene Expression and Computational Methods
    Debraj GuhaThakurta
    Lisanne Palomar
    Gary D. Stormo
    Pat Tedesco
    Thomas E. Johnson
    First Published May 1, 2002
  - Genes in a Refined Smith-Magenis Syndrome Critical Deletion Interval on Chromosome 17p11.2 and the Syntenic Region of the Mouse
    Weimin Bi
    Jiong Yan
    Paweł Stankiewicz
    Sung-Sup Park
    Katherina Walz
    Cornelius F. Boerkoel Lorraine Potocki Lisa G. Shaffer
    ...[+3 authors]...,
    Koen Devriendt
    Małgorzata J.M. Nowaczyk
    Ken Inoue
    James R. Lupski
    First Published May 1, 2002
  - Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs
    Sung-Sup Park
    Paweł Stankiewicz
    Weimin Bi
    Christine Shaw
    Jessica Lehoczky
    First Published May 1, 2002
LETTERS
- - Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting
    Mathieu Blanchette
    Martin Tompa
    First Published May 1, 2002
  - Transcriptional Regulation of the Stem Cell Leukemia Gene (SCL) — Comparative Analysis of Five Vertebrate SCL Loci
    Berthold Göttgens
    Linda M. Barton
    Michael A. Chapman
    Angus M. Sinclair
    Bjarne Knudsen
    Darren Grafham
    ...[+1 authors]...,
    James G.R. Gilbert
    Jane Rogers
    David R. Bentley
    Anthony R. Green
    First Published May 1, 2002
  - Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis
    Nathan D. Price
    Jason A. Papin
    Bernhard Ø. Palsson
    First Published April 12, 2002
  - Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes
    Andrew Mounsey
    Petra Bauer
    Ian A. Hope
    First Published April 12, 2002
  - Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q
    Sarah F. Smith
    Philip Snell
    Frank Gruetzner
    Anthony J. Bench
    Thomas Haaf
    First Published April 12, 2002
  - Large-Scale Protein Annotation through Gene Ontology
    Hanqing Xie
    Alon Wasserman
    Zurit Levine
    Amit Novik
    Vladimir Grebinskiy
    First Published May 1, 2002
  - Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery
    Daniel G. Peterson
    Stefan R. Schulze
    Erica B. Sciara
    Scott A. Lee
    John E. Bowers
    Alexander Nagel
    ...[+1 authors]...,
    Ning Jiang
    Deanne C. Tibbitts
    Susan R. Wessler
    Andrew H. Paterson
    First Published April 12, 2002
  - Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia
    Hiroyuki Ogata
    Stéphane Audic
    Chantal Abergel
    Pierre-Edouard Fournier
    Jean-Michel Claverie
    First Published April 12, 2002
  - A Fine Physical Map of the Rice Chromosome 4
    Qiang Zhao
    Yu Zhang
    Zhukuan Cheng
    Mingsheng Chen
    Shengyue Wang
    Qi Feng Yucheng Huang Ying Li Yesheng Tang Bo Zhou Zhehua Chen Shuliang Yu Jingjie Zhu Xin Hu Jie Mu Kai Ying Pei Hao Lei Zhang Yiqi Lu Lei S. Zhang Yilei Liu Zhen Yu Danlin Fan Qijun Weng Ling Chen Tingting Lu Xiaohui Liu Peixin Jia Tongguo Sun Yongrui Wu Yujun Zhang Ying Lu Can Li Rong Wang Haiyan Lei Tao Li Hao Hu Mei Wu Runquan Zhang Jianping Guan Jia Zhu Gang Fu Minghong Gu Guofan Hong
    ...[+39 authors]...,
    Yongbiao Xue
    Rod Wing
    Jiming Jiang
    Bin Han
    First Published May 1, 2002
METHODS
- - RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
    Jun Wang
    Gane Ka-Shu Wong
    Peixiang Ni
    Yujun Han
    Xiangang Huang
    Jianguo Zhang Chen Ye Yong Zhang Jianfei Hu Kunlin Zhang Xin Xu Lijuan Cong Hong Lu Xide Ren Xiaoyu Ren Jun He Lin Tao Douglas A. Passey
    ...[+13 authors]...,
    Jian Wang
    Huanming Yang
    Jun Yu
    Songgang Li
    First Published May 1, 2002
  - rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites
    Gabriela G. Loots
    Ivan Ovcharenko
    Lior Pachter
    Inna Dubchak
    Edward M. Rubin
    First Published April 12, 2002
ERRATUM
- - Erratum for vol. 12, p. 584
    First Published May 1, 2002

Table of Contents

Volume 12, Issue 5 | May 2002

INSIGHT/OUTLOOK

What is Finished, and Why Does it Matter

PERSPECTIVE

Biomedical Applications and Studies of Molecular Evolution: A Proposal for a Primate Genomic Library Resource

COMMENTARY

Time for a Unified System of Mutation Description and Reporting: A Review of Locus-Specific Mutation Databases

ARTICLES

A Complete Sequence of the T. tengcongensis Genome

Identification of a Novel cis-Regulatory Element Involved in the Heat Shock Response in Caenorhabditis elegans Using Microarray Gene Expression and Computational Methods

Genes in a Refined Smith-Magenis Syndrome Critical Deletion Interval on Chromosome 17p11.2 and the Syntenic Region of the Mouse

Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs

LETTERS

Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting

Transcriptional Regulation of the Stem Cell Leukemia Gene (SCL) — Comparative Analysis of Five Vertebrate SCL Loci

Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes

Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q

Large-Scale Protein Annotation through Gene Ontology

Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery

Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia

A Fine Physical Map of the Rice Chromosome 4

METHODS

RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites

ERRATUM

Erratum for vol. 12, p. 584

Table of Contents

Volume 12, Issue 5 | May 2002

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INSIGHT/OUTLOOK

PERSPECTIVE

COMMENTARY

ARTICLES

LETTERS

METHODS

ERRATUM