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C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

  • First Published November 15, 2017
Method

Rapid molecular assays to study human centromere genomics

  • First Published November 15, 2017
Research

Drosophila-like dosage compensation mechanism in a reptile lineage" > Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage

  • First Published November 13, 2017
Research

Comparative genome analysis of programmed DNA elimination in nematodes

  • First Published November 8, 2017
Method

Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair

  • First Published November 7, 2017
Research

Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences

  • First Published November 2, 2017
Method

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

  • First Published November 2, 2017
Resource

C. elegans" > Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans

  • First Published October 31, 2017
Research

Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation

  • First Published October 27, 2017
Method

A novel approach for data integration and disease subtyping

  • First Published October 24, 2017
Research

Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data

  • First Published October 13, 2017
Research

Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons

  • First Published October 13, 2017
Method

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

  • First Published October 13, 2017
Method

High-throughput single-molecule telomere characterization

  • First Published October 12, 2017
Research

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes

  • First Published October 12, 2017
Method

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data

  • First Published October 12, 2017
Research

Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol

  • First Published October 12, 2017
Resource

A genome-wide interactome of DNA-associated proteins in the human liver

  • First Published October 11, 2017
Method

cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis" > Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis

  • First Published October 11, 2017
Method

cis-acting genetic variation using allelic fold change" > Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change

  • First Published October 11, 2017
Method

Co-expression networks reveal the tissue-specific regulation of transcription and splicing

  • First Published October 11, 2017
Research

Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways

  • First Published October 6, 2017
Corrigendum

Corrigendum: A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

  • First Published October 3, 2017
Research

Massive reshaping of genome–nuclear lamina interactions during oncogene-induced senescence

  • First Published September 15, 2017
Research

S. cerevisiae and S. pombe" > Comparative analysis of alternative polyadenylation in S. cerevisiae and S. pombe

  • First Published September 15, 2017
Research

Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity

  • First Published September 14, 2017
Research

Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control

  • First Published September 13, 2017
Method

Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints

  • First Published September 13, 2017
Research

Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation

  • First Published September 13, 2017
Research

Identification of a core TP53 transcriptional program with highly distributed tumor suppressive activity

  • First Published September 13, 2017
Method

Detection of long repeat expansions from PCR-free whole-genome sequence data

  • First Published September 8, 2017
Resource

Toward the human cellular microRNAome

  • First Published September 6, 2017
Method

Solid-phase reverse transfection for intracellular delivery of functionally active proteins

  • First Published September 5, 2017
Research

RNA editing in bacteria recodes multiple proteins and regulates an evolutionarily conserved toxin-antitoxin system

  • First Published September 1, 2017
Method

Optimizing genomic medicine in epilepsy through a gene-customized approach to missense variant interpretation

  • First Published September 1, 2017
Corrigendum

Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

  • First Published September 1, 2017
Corrigendum

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

  • First Published September 1, 2017
Corrigendum

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published September 1, 2017
Resource

An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms

  • First Published August 30, 2017
Research

Transposable elements are the primary source of novelty in primate gene regulation

  • First Published August 30, 2017
Method

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology

  • First Published August 30, 2017
Method

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

  • First Published August 30, 2017
Method

Detection of structural mosaicism from targeted and whole-genome sequencing data

  • First Published August 30, 2017
Method

Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies

  • First Published August 28, 2017
Research

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets

  • First Published August 7, 2017
Resource

Assembly and analysis of 100 full MHC haplotypes from the Danish population

  • First Published August 3, 2017
Corrigendum

Corrigendum: TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

  • First Published August 1, 2017
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