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Method

netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysis

  • First Published January 28, 2020
Resource

Organ-level protein networks as a reference for the host effects of the microbiome

  • First Published January 28, 2020
Method

Ancestry-agnostic estimation of DNA sample contamination from sequence reads

  • First Published January 24, 2020
Research

HOTAIR regulatory element modulates glioma cell sensitivity to temozolomide through long-range regulation of multiple target genes" > A HOTAIR regulatory element modulates glioma cell sensitivity to temozolomide through long-range regulation of multiple target genes

  • First Published January 17, 2020
Resource

A comparison of gene expression and DNA methylation patterns across tissues and species

  • First Published January 17, 2020
Corrigendum

Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development

  • First Published January 9, 2020
Corrigendum

Corrigendum: Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

  • First Published January 9, 2020
Method

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome

  • First Published January 6, 2020
Method

Streptococcus thermophilus CRISPR1-Cas9" > Versatile and robust genome editing with Streptococcus thermophilus CRISPR1-Cas9

  • First Published January 3, 2020
Research

Genome-wide redistribution of 24-nt siRNAs in rice gametes

  • First Published January 2, 2020
Research

Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer

  • First Published December 23, 2019
Method

Identification of pathogenic variant enriched regions across genes and gene families

  • First Published December 23, 2019
Method

Predicting transfer RNA gene activity from sequence and genome context

  • First Published December 19, 2019
Research

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

  • First Published December 18, 2019
Research

Heterodimerization of TFAP2 pioneer factors drives epigenomic remodeling during neural crest specification

  • First Published December 17, 2019
Resource

Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow–derived stromal stem cells

  • First Published December 12, 2019
Resource

Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9

  • First Published December 12, 2019
Resource

Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity" > The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

  • First Published December 6, 2019
Research

PRANCR as a novel regulator of epidermal homeostasis" > A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis

  • First Published December 4, 2019
Reviewer Index

Reviewer Index, Volume 29, 2019

  • First Published December 2, 2019
Method

Quantitative prediction of enhancer–promoter interactions

  • First Published December 2, 2019
Method

Identifying gene function and module connections by the integration of multispecies expression compendia

  • First Published November 21, 2019
Method

Modeling Niemann–Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation

  • First Published November 21, 2019
Resource

Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

  • First Published November 21, 2019
Research

A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

  • First Published November 19, 2019
Research

Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast

  • First Published November 18, 2019
Research

Promoter-specific dynamics of TATA-binding protein association with the human genome

  • First Published November 15, 2019
Method

Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing

  • First Published November 14, 2019
Method

Copolymerization of single-cell nucleic acids into balls of acrylamide gel

  • First Published November 14, 2019
Research

Clonal copy-number mosaicism in autoreactive T lymphocytes in diabetic NOD mice

  • First Published November 6, 2019
Method

AIDE: annotation-assisted isoform discovery with high precision

  • First Published November 6, 2019
Method

Saccharomyces cerevisiae genome" > Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome

  • First Published November 6, 2019
Research

Drosophila metabolome" > Systems genetics of the Drosophila metabolome

  • First Published November 6, 2019
Method

Network-based hierarchical population structure analysis for large genomic data sets

  • First Published November 6, 2019
Research

Synchronized replication of genes encoding the same protein complex in fast-proliferating cells

  • First Published October 29, 2019
Method

Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants

  • First Published October 24, 2019
Method

Identification and dynamic quantification of regulatory elements using total RNA

  • First Published October 24, 2019
Resource

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

  • First Published October 24, 2019
Resource

Genes essential for embryonic stem cells are associated with neurodevelopmental disorders

  • First Published October 24, 2019
Research

Megalobrama amblycephala × Culter alburnus" > The subgenomes show asymmetric expression of alleles in hybrid lineages of Megalobrama amblycephala × Culter alburnus

  • First Published October 24, 2019
Method

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples

  • First Published October 24, 2019
Research

Cotargeting among microRNAs in the brain

  • First Published October 24, 2019
Resource

Dynamics of microRNA expression during mouse prenatal development

  • First Published October 23, 2019
Method

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data

  • First Published October 18, 2019
Research

Pedigree-based estimation of human mobile element retrotransposition rates

  • First Published October 1, 2019
Method

RNA-seq as a tool for evaluating human embryo competence

  • First Published September 23, 2019
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