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INSIGHT/OUTLOOK

SAGE Thoughts on Aging

Thomas E. Johnson

First Published August 1, 2001

LETTER

Sequence Variation Within the Fragile X Locus

Debra J. Mathews
Carl Kashuk
Gale Brightwell
Evan E. Eichler
Aravinda Chakravarti

First Published August 1, 2001

INSIGHT/OUTLOOK

Transposon-Induced Hotspots for Genomic Instability

Margaret G. Kidwell
Andrew J. Holyoake

First Published August 1, 2001

METHODS

Prediction of Protein Functional Domains from Sequences Using Artificial Neural Networks

János Murvai
Kristian Vlahoviček
Csaba Szepesvári
Sándor Pongor

First Published August 1, 2001

LETTER

Gene Expression Profiling in Human Fetal Liver and Identification of Tissue- and Developmental-Stage-Specific Genes through Compiled Expression Profiles and Efficient Cloning of Full-Length cDNAs

Yongtao Yu
Chenggang Zhang
Gangqiao Zhou
Songfeng Wu
Xianghu Qu
Handong Wei Guichun Xing Chunna Dong Yun Zhai Jinghong Wan Shuguang Ouyang Li Li Shaowen Zhang
... [+8 authors] ...,
Kaixin Zhou
Yinan Zhang
Chutse Wu
Fuchu He

First Published August 1, 2001

METHODS

Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier

Rickard Sandberg
Gösta Winberg
Carl-Ivar Bränden
Alexander Kaske
Ingemar Ernberg
Joakim Cöster

First Published August 1, 2001

RESOURCE

Bradyrhizobium japonicum Genome" > A Marker-Dense Physical Map of the Bradyrhizobium japonicum Genome

Jeffrey P. Tomkins
Todd C. Wood
Minviluz G. Stacey
John T. Loh
Adam Judd
Jose L. Goicoechea
Gary Stacey
Michael J. Sadowsky
Rod A. Wing

First Published August 1, 2001

RESOURCE

Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential" > Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential

Svetlana Temnykh
Genevieve DeClerck
Angelika Lukashova
Leonard Lipovich
Samuel Cartinhour
Susan McCouch

First Published August 1, 2001

INSIGHT/OUTLOOK

The Search for Meaning in Noncoding DNA

Andrew G. Clark

First Published August 1, 2001

LETTER

Prokaryotic Homologs of the Eukaryotic DNA-End-Binding Protein Ku, Novel Domains in the Ku Protein and Prediction of a Prokaryotic Double-Strand Break Repair System

L. Aravind
Eugene V. Koonin

First Published August 1, 2001

METHODS

Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation

Shoulian Dong
Eugene Wang
Linda Hsie
Yanxiang Cao
Xiaogiong Chen
Thomas R. Gingeras

First Published July 12, 2001

ARTICLE

Gene Targeting of Desrt, a Novel ARID Class DNA-Binding Protein, Causes Growth Retardation and Abnormal Development of Reproductive Organs

Mireille H. Lahoud
Sika Ristevski
Deon J. Venter
Lars S. Jermiin
Ivan Bertoncello
Silva Zavarsek Sue Hasthorpe
... [+2 authors] ...,
John Drago
David de Kretser
Paul J. Hertzog
Ismail Kola

First Published July 12, 2001

LETTER

Drosophila buzzatii Genome Induced by Transposon Insertions" > Molecular Characterization of Two Natural Hotspots in the Drosophila buzzatii Genome Induced by Transposon Insertions

Mario Cáceres
Marta Puig
Alfredo Ruiz

First Published July 12, 2001

ARTICLE

Caenorhabditis elegans " > Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans

Steven J.M. Jones
Donald L. Riddle
Anatoli T. Pouzyrev
Victor E. Velculescu
LaDeana Hillier
Sean R. Eddy
... [+1 authors] ...,
Shawn L. Stricklin
David L. Baillie
Robert Waterston
Marco A. Marra

First Published July 12, 2001

RESOURCE

Virtual Genome Scan: A Tool for Restriction Landmark-Based Scanning of the Human Genome

Jean-Marie Rouillard
Ayse E. Erson
Rork Kuick
Jun-ichi Asakawa
Katharina Wimmer
Martine Muleris
Elizabeth M. Petty
Samir Hanash

First Published July 12, 2001

ERRATUM

Errata for vol. 11, p. 901

First Published July 1, 2001

METHODS

High-Throughput Plasmid Purification for Capillary Sequencing

Christopher J. Elkin
Paul M. Richardson
H. Matthew Fourcade
Nancy M. Hammon
Martin J. Pollard
Paul F. Predki
Tijana Glavina
Trevor L. Hawkins

First Published July 1, 2001

RESOURCE

A Sequence-Based Integrated Map of Chromosome 22

William J. Tapper
Newton E. Morton
Ian Dunham
Xiayi Ke
Andrew Collins

First Published July 1, 2001

INSIGHT/OUTLOOK

Microsatellites in the Eukaryotic DNA Mismatch Repair Genes as Modulators of Evolutionary Mutation Rate

Dong Kyung Chang
David Metzgar
Christopher Wills
C. Richard Boland

First Published July 1, 2001

METHODS

An Efficient and Robust Statistical Modeling Approach to Discover Differentially Expressed Genes Using Genomic Expression Profiles

Jeffrey G. Thomas
James M. Olson
Stephen J. Tapscott
Lue Ping Zhao

First Published July 1, 2001

ERRATUM

Errata for vol. 11, p. 667

First Published July 1, 2001

ERRATUM

Errata for vol. 11, p. 677

First Published July 1, 2001

ARTICLE

Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses

Harmit S. Malik
Thomas H. Eickbush

First Published July 1, 2001

ARTICLE

Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis" > Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis

Paul F. Cliften
LaDeana W. Hillier
Lucinda Fulton
Tina Graves
Tracie Miner
Warren R. Gish
Robert H. Waterston
Mark Johnston

First Published July 1, 2001

INSIGHT/OUTLOOK

Identifying Functional Elements by Comparative DNA Sequence Analysis

Martin Tompa

First Published July 1, 2001

LETTER

Danio rerio " > The Repertoire of Na,K-ATPase α and β Subunit Genes Expressed in the Zebrafish, Danio rerio

S. Johannes R. Rajarao
Victor A. Canfield
Manzoor-Ali P.K. Mohideen
Yi-Lin Yan
John H. Postlethwait
Keith C. Cheng
Robert Levenson

First Published July 1, 2001

INSIGHT/OUTLOOK

Systematic Analysis of DNA Microarray Data: Ordering and Interpreting Patterns of Gene Expression

Paul J. Planet
Rob DeSalle
Mark Siddall
Timothy Bael
Indra Neil Sarkar
Scott E. Stanley

First Published July 1, 2001

ERRATUM

Errata for vol. 11, p. 645

First Published July 1, 2001

RESOURCE

Toward High-Throughput Genotyping: Dynamic and Automatic Software for Manipulating Large-Scale Genotype Data Using Fluorescently Labeled Dinucleotide Markers

Jin-Long Li
Hongyi Deng
Dong-Bing Lai
Fuhua Xu
Jian Chen
Guimin Gao
Robert R. Recker
Hong-Wen Deng

First Published July 1, 2001

METHODS

Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function

Barry R. Bochner
Peter Gadzinski
Eugenia Panomitros

First Published July 1, 2001

LETTER

Gorilla gorilla is Associated with Microduplication of the Chromosome Fragment Syntenic to Sequences Surrounding the Human Proximal CMT1A-REP" > The Evolutionary Chromosome Translocation 4;19 in Gorilla gorilla is Associated with Microduplication of the Chromosome Fragment Syntenic to Sequences Surrounding the Human Proximal CMT1A-REP

Pawel Stankiewicz
Sung-Sup Park
Ken Inoue
James R. Lupski

First Published July 1, 2001

LETTER

Linkage Disequilibrium Between Microsatellite Markers Extends Beyond 1 cM on Chromosome 20 in Finns

Karen L. Mohlke
Ethan M. Lange
Timo T. Valle
Soumitra Ghosh
Victoria L. Magnuson
Kaisa Silander Richard M. Watanabe Peter S. Chines
... [+3 authors] ...,
Richard N. Bergman
Jaakko Tuomilehto
Francis S. Collins
Michael Boehnke

First Published July 1, 2001

METHODS

Predicting Splice Variant from DNA Chip Expression Data

Gang Ken Hu
Steven J Madore
Brian Moldover
Tim Jatkoe
David Balaban
Jeffrey Thomas
Yixin Wang

First Published July 1, 2001

ERRATUM

Errata for vol. 11, p. 817

First Published July 1, 2001

RESOURCE

Massive Sequence Comparisons as a Help in Annotating Genomic Sequences

Alexandra Louis
Emmanuelle Ollivier
Jean-Christophe Aude
Jean-Loup Risler

First Published June 12, 2001

METHODS

High-Throughput Genotyping with Single Nucleotide Polymorphisms

Koustubh Ranade
Mau-Song Chang
Chih-Tai Ting
Dee Pei
Chin-Fu Hsiao
Michael Olivier Robert Pesich Joan Hebert Yii-Der I. Chen Victor J. Dzau David Curb
... [+6 authors] ...,
Richard Olshen
Neil Risch
David R. Cox
David Botstein

First Published June 12, 2001

METHODS

Arrays of Arrays for High-Throughput Gene Expression Profiling

Patrick P. Zarrinkar
James K. Mainquist
Matthew Zamora
David Stern
John B. Welsh
Lisa M. Sapinoso
Garret M. Hampton
David J. Lockhart

First Published June 12, 2001

LETTER

+ T Cells" > Temporal Gene Regulation During HIV-1 Infection of Human CD4⁺ T Cells

Jacques Corbeil
Dennis Sheeter
Davide Genini
Steffney Rought
Lorenzo Leoni
Pinyi Du Mark Ferguson Daniel R. Masys John B. Welsh J. Lynn Fink Roman Sasik
... [+6 authors] ...,
David Huang
Jorg Drenkow
Douglas D. Richman
Thomas Gingeras

First Published June 12, 2001

REPORT

Arabidopsis thaliana " > Conservation of Microstructure between a Sequenced Region of the Genome of Rice and Multiple Segments of the Genome of Arabidopsis thaliana

Klaus Mayer
George Murphy
Renato Tarchini
Rolf Wambutt
Guido Volckaert
Thomas Pohl Andreas Düsterhöft Willem Stiekema Karl-Dieter Entian Nancy Terryn Kai Lemcke Dirk Haase Caroline R. Hall Anne-Marie van Dodeweerd
... [+9 authors] ...,
Scott V. Tingey
Hans-Werner Mewes
Michael W. Bevan
Ian Bancroft

First Published June 12, 2001

RESOURCE

An Enhanced Linkage Map of the Sheep Genome Comprising More Than 1000 Loci

Jillian F. Maddox
Kizanne P. Davies
Allan M. Crawford
Dennis J. Hulme
Daniel Vaiman
Edmond P. Cribiu Bradley A. Freking Ken J. Beh Noelle E. Cockett Nina Kang Christopher D. Riffkin Roger Drinkwater Stephen S. Moore Ken G. Dodds Joanne M. Lumsden Tracey C. van Stijn Sin H. Phua David L. Adelson Heather R. Burkin Judith E. Broom Johannes Buitkamp Lisa Cambridge William T. Cushwa Emily Gerard Susan M. Galloway Blair Harrison Rachel J. Hawken Stefan Hiendleder Hannah M. Henry Juan F. Medrano
... [+25 authors] ...,
Korena A. Paterson
Laurent Schibler
Roger T. Stone
Beryl van Hest

First Published June 12, 2001

METHODS

Sequence-Based Design of Single-Copy Genomic DNA Probes for Fluorescence In Situ Hybridization

Peter K. Rogan
Patricia M. Cazcarro
Joan H.M. Knoll

First Published June 1, 2001

LETTER

The 1.4-Mb CMT1A Duplication/HNPP Deletion Genomic Region Reveals Unique Genome Architectural Features and Provides Insights into the Recent Evolution of New Genes

Ken Inoue
Ken Dewar
Nicholas Katsanis
Lawrence T. Reiter
Eric S. Lander
Keri L. Devon
Dudley W. Wyman
James R. Lupski
Bruce Birren

First Published June 1, 2001

RESOURCE

Drosophila melanogaster Genome" > Neuropeptides and Neuropeptide Receptors in the Drosophila melanogaster Genome

Randall S. Hewes
Paul H. Taghert

First Published June 1, 2001

INSIGHT/OUTLOOK

Indian Caste Origins: Genomic Insights and Future Outlook

Partha P. Majumder

First Published June 1, 2001

INSIGHT/OUTLOOK

From Comparative and Functional Genomics to Practical Decisions in the Clinic: A View from the Trenches

Judith Margolin

First Published June 1, 2001

RESOURCE

Drosophila melanogaster " > A Systematic Analysis of Human Disease-Associated Gene Sequences In Drosophila melanogaster

Lawrence T. Reiter
Lorraine Potocki
Sam Chien
Michael Gribskov
Ethan Bier

First Published June 1, 2001

LETTER

Sequence Diversity in Genes of Lipid Metabolism

Christine Kim Garcia
Gabriele Mues
Yuanlan Liao
Tommy Hyatt
Nila Patil
Jonathan C. Cohen
Helen H. Hobbs

First Published June 1, 2001

REPORT

TTY2: A Multicopy Y-Linked Gene Family

Eleni Makrinou
Margaret Fox
Michael Lovett
Kim Haworth
Jessie M. Cameron
Kay Taylor
Yvonne H. Edwards

First Published June 1, 2001

METHODS

Rapid Amplification of Plasmid and Phage DNA Using Phi29 DNA Polymerase and Multiply-Primed Rolling Circle Amplification

Frank B. Dean
John R. Nelson
Theresa L. Giesler
Roger S. Lasken

First Published June 1, 2001

LETTER

Analysis of the Cat Eye Syndrome Critical Region in Humans and the Region of Conserved Synteny in Mice: A Search for Candidate Genes at or near the Human Chromosome 22 Pericentromere

Tim K. Footz
Polly Brinkman-Mills
Graham S. Banting
Stephanie A. Maier
M. Ali Riazi
Lindsay Bridgland Song Hu Bruce Birren Shinsei Minoshima Nobuyoshi Shimizu HuaQin Pan Thuan Nguyen Fang Fang Ying Fu Linda Ray Hui Wu Steve Shaull Stacey Phan Ziyun Yao Feng Chen Axin Huan Ping Hu Qiaoyan Wang
... [+18 authors] ...,
Phoebe Loh
Sulan Qi
Bruce A. Roe
Heather E. McDermid

First Published June 1, 2001

INSIGHT/OUTLOOK

Application of SNP Technologies in Medicine: Lessons Learned and Future Challenges

Eric Lai

First Published June 1, 2001

ARTICLE

Genome-Wide Epistatic Interaction Analysis Reveals Complex Genetic Determinants of Circadian Behavior in Mice

Kazuhiro Shimomura
Sharon S. Low-Zeddies
David P. King
Thomas D.L. Steeves
Andrew Whiteley
Jani Kushla Peter D. Zemenides
... [+2 authors] ...,
Andrew Lin
Martha Hotz Vitaterna
Gary A. Churchill
Joseph S. Takahashi

First Published June 1, 2001

RESOURCE

Drosophila melanogaster " > Single Nucleotide Polymorphism Markers for Genetic Mapping in Drosophila melanogaster

Roger A. Hoskins
Alexander C. Phan
Mohammed Naeemuddin
Felipa A. Mapa
David A. Ruddy
Jessica J. Ryan
... [+1 authors] ...,
Lynn M. Young
Trent Wells
Casey Kopczynski
Michael C. Ellis

First Published May 14, 2001

LETTER

Segmental Duplications: Organization and Impact Within the Current Human Genome Project Assembly

Jeffrey A. Bailey
Amy M. Yavor
Hillary F. Massa
Barbara J. Trask
Evan E. Eichler

First Published May 8, 2001

LETTER

Comprehensive Genome Sequence Analysis of a Breast Cancer Amplicon

Colin Collins
Stanislav Volik
David Kowbel
David Ginzinger
Bauke Ylstra
Thomas Cloutier Trevor Hawkins Paul Predki Christopher Martin
... [+4 authors] ...,
Meredith Wernick
Wen-Lin Kuo
Arthur Alberts
Joe W. Gray

First Published May 8, 2001

ARTICLE

Evolutionary Role of Restriction/Modification Systems as Revealed by Comparative Genome Analysis

Eduardo P.C. Rocha
Antoine Danchin
Alain Viari

First Published May 8, 2001

LETTER

Genome Evolution at the Genus Level: Comparison of Three Complete Genomes of Hyperthermophilic Archaea

Odile Lecompte
Raymond Ripp
Valérie Puzos-Barbe
Simone Duprat
Roland Heilig
Jacques Dietrich
Jean-Claude Thierry
Olivier Poch

First Published May 8, 2001

LETTER

Genetic Evidence on the Origins of Indian Caste Populations

Michael Bamshad
Toomas Kivisild
W. Scott Watkins
Mary E. Dixon
Chris E. Ricker
Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
... [+9 authors] ...,
Son V. Nguyen
Marion L. Carroll
Mark A. Batzer
Lynn B. Jorde

First Published May 8, 2001

LETTER

Sequence Variability of a Human Pseudogene

Rosa Martínez-Arias
Francesc Calafell
Eva Mateu
David Comas
Aida Andrés
Jaume Bertranpetit

First Published May 8, 2001

EDITORIAL

Unlimited Access—Limitless Success

Laurie Goodman

First Published May 1, 2001

LETTER

Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence" > Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence

Tatyana B. Nesterova
Sergey Ya. Slobodyanyuk
Eugene A. Elisaphenko
Alexander I. Shevchenko
Colette Johnston
Marina E. Pavlova
... [+1 authors] ...,
Igor B. Rogozin
Nikolay N. Kolesnikov
Neil Brockdorff
Suren M. Zakian

First Published May 1, 2001

LETTER

The Basic Helix-Loop-Helix Protein Family: Comparative Genomics and Phylogenetic Analysis

Valérie Ledent
Michel Vervoort

First Published May 1, 2001

METHODS

Directed Gap Closure in Large-Scale Sequencing Projects

Marcus Frohme
Anamaria A. Camargo
Claudia Czink
Adriana Y. Matsukuma
Andrew J.G. Simpson
Jörg D. Hoheisel
Sergio Verjovski-Almeida

First Published May 1, 2001

LETTER

Euteleost Fish Genomes are Characterized by Expansion of Gene Families

Marc Robinson-Rechavi
Oriane Marchand
Héctor Escriva
Pierre-Luc Bardet
Dominique Zelus
Sandrine Hughes
Vincent Laudet

First Published May 1, 2001

COMMENTARY

Segmental Duplications: What's Missing, Misassigned, and Misassembled—and Should We Care?

Evan E. Eichler

First Published May 1, 2001

COMMENTARY

The Human Genome Sequence Expedition: Views from the “Base Camp”

Eric D. Green
Aravinda Chakravarti

First Published May 1, 2001

COMMENTARY

Through the Lens of the Sequence

Ellen Wright Clayton

First Published May 1, 2001

METHODS

Predicting Deleterious Amino Acid Substitutions

Pauline C. Ng
Steven Henikoff

First Published May 1, 2001

ARTICLE

The Complete Human Olfactory Subgenome

Gustavo Glusman
Itai Yanai
Irit Rubin
Doron Lancet

First Published May 1, 2001

LETTER

clpg) Locus and Identification of Six Imprinted Transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8 " > Human–Ovine Comparative Sequencing of a 250-kb Imprinted Domain Encompassing the Callipyge (clpg) Locus and Identification of Six Imprinted Transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8

Carole Charlier
Karin Segers
Danny Wagenaar
Latifa Karim
Stéphane Berghmans
Olivier Jaillon Tracy Shay
... [+2 authors] ...,
Jean Weissenbach
Noelle Cockett
Gabor Gyapay
Michel Georges

First Published May 1, 2001

LETTER

Computational Inference of Homologous Gene Structures in the Human Genome

Ru-Fang Yeh
Lee P. Lim
Christopher B. Burge

First Published May 1, 2001

LETTER

X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies" > From First Base: The Sequence of the Tip of the X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies

Panayiotis V. Benos
Melanie K. Gatt
Lee Murphy
David Harris
Bart Barrell
Concepcion Ferraz Sophie Vidal Christine Brun Jacques Demaille Edouard Cadieu Stephane Dreano Stéphanie Gloux Valerie Lelaure Stephanie Mottier Francis Galibert Dana Borkova Belen Miñana Fotis C. Kafatos Slava Bolshakov Inga Sidén-Kiamos George Papagiannakis Lefteris Spanos Christos Louis Encarnación Madueño Beatriz de Pablos Juan Modolell Annette Peter Petra Schöttler Meike Werner Fotini Mourkioti Nicole Beinert Gordon Dowe Ulrich Schäfer Herbert Jäckle Alain Bucheton Debbie Callister Lorna Campbell Nadine S. Henderson Paul J. McMillan Cathy Salles Evelyn Tait Phillipe Valenti Robert D.C. Saunders
... [+38 authors] ...,
Alain Billaud
Lior Pachter
David M. Glover
Michael Ashburner

First Published May 1, 2001

LETTER

Genomic Anatomy of a Premier Major Histocompatibility Complex Paralogous Region on Chromosome 1q21–q22

Takashi Shiina
Asako Ando
Yumiko Suto
Fumio Kasai
Atsuko Shigenari
Nobusada Takishima Eri Kikkawa Kyoko Iwata Yuko Kuwano Yuka Kitamura Yumiko Matsuzawa Kazumi Sano Masahiro Nogami Hisako Kawata Suyun Li Yasuhito Fukuzumi Masaaki Yamazaki Hiroyuki Tashiro Gen Tamiya Atsushi Kohda Katsuzumi Okumura Toshimichi Ikemura Eiichi Soeda
... [+18 authors] ...,
Nobuhisa Mizuki
Minoru Kimura
Seiamak Bahram
Hidetoshi Inoko

First Published May 1, 2001

METHODS

Basecalling with LifeTrace

Dirk Walther
Gábor Bartha
Macdonald Morris

First Published May 1, 2001

METHODS

Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs

Zhengyan Kan
Eric C. Rouchka
Warren R. Gish
David J. States

First Published May 1, 2001

INSIGHT/OUTLOOK

Are We Polyploids? A Brief History of One Hypothesis

Wojciech Makałowski

First Published May 1, 2001

ERRATUM

Errata for vol. 11, p. 531

First Published May 1, 2001

COMMENTARY

Contemplating the End of the Beginning

Francis S. Collins

First Published May 1, 2001

INSIGHT/OUTLOOK

Lactococcus lactis Adds Flavor to Genomics" > Complete DNA Sequence of Lactococcus lactis Adds Flavor to Genomics

Oscar P. Kuipers

First Published May 1, 2001

LETTER

Evaluation of Gene-Finding Programs on Mammalian Sequences

Sanja Rogic
Alan K. Mackworth
Francis B.F. Ouellette

First Published May 1, 2001

RESOURCE

Assembly, Annotation, and Integration of UNIGENE Clusters into the Human Genome Draft

Degen Zhuo
Wei D. Zhao
Fred A. Wright
Hee-Yung Yang
Jian-Ping Wang
Russell Sears Troy Baer Do-Hun Kwon David Gordon Solomon Gibbs Dean Dai Qing Yang Joe Spitzner
... [+8 authors] ...,
Ralf Krahe
Don Stredney
Al Stutz
Bo Yuan

First Published April 11, 2001

LETTER

Lactococcus lactis ssp. lactis IL1403" > The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403

Alexander Bolotin
Patrick Wincker
Stéphane Mauger
Olivier Jaillon
Karine Malarme
Jean Weissenbach
S. Dusko Ehrlich
Alexei Sorokin

First Published April 11, 2001

REPORT

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

Yutaka Suzuki
Tatsuhiko Tsunoda
Jun Sese
Hirotoshi Taira
Junko Mizushima-Sugano
Hiroko Hata Toshio Ota Takao Isogai Toshihiro Tanaka Yusuke Nakamura Akira Suyama
... [+6 authors] ...,
Yoshiyuki Sakaki
Shinichi Morishita
Kousaku Okubo
Sumio Sugano

First Published April 11, 2001

LETTER

Hox-Bearing Chromosomes" > Ancient Genome Duplications Did Not Structure the Human Hox-Bearing Chromosomes

Austin L. Hughes
Jack da Silva
Robert Friedman

First Published April 11, 2001

ARTICLE

Whole Proteome pI Values Correlate with Subcellular Localizations of Proteins for Organisms within the Three Domains of Life

Russell Schwartz
Claire S. Ting
Jonathan King

First Published April 11, 2001

ERRATUM

Errata for vol. 11, p. 319

First Published April 1, 2001

LETTER

A Comparative Genomics Approach to Prediction of New Members of Regulons

Kai Tan
Gabriel Moreno-Hagelsieb
Julio Collado-Vides
Gary D. Stormo

First Published April 1, 2001

METHODS

Self-Reporting PNA/DNA Primers for PCR Analysis

Mark J. Fiandaca
Jens J. Hyldig-Nielsen
Brian D. Gildea
James M. Coull

First Published April 1, 2001

METHODS

Automated Finishing with Autofinish

David Gordon
Cindy Desmarais
Phil Green

First Published April 1, 2001

INSIGHT/OUTLOOK

Sleepy Dogs Don't Lie: A Genetic Disorder Informative About Sleep

Thomas S. Kilduff

First Published April 1, 2001

INSIGHT/OUTLOOK

Centromere on the Move

Lee H. Wong
K. H. Andy Choo

First Published April 1, 2001

LETTER

Centromere Emergence in Evolution

Mario Ventura
Nicoletta Archidiacono
Mariano Rocchi

First Published April 1, 2001

METHODS

Homogeneous Assays for Single-Nucleotide Polymorphism Typing Using AlphaScreen

Lucille Beaudet
Julie Bédard
Billy Breton
Roberto J. Mercuri
Marcia L. Budarf

First Published April 1, 2001

COMMENTARY AND REVIEW

Poster Award Announcement

First Published April 1, 2001

LETTER

Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis

Midori Kato-Maeda
Jeanne T. Rhee
Thomas R. Gingeras
Hugh Salamon
Jorg Drenkow
Nat Smittipat
Peter M. Small

First Published April 1, 2001

LETTER

Genome-Scale Compositional Comparisons in Eukaryotes

Andrew J. Gentles
Samuel Karlin

First Published April 1, 2001

RESOURCE

Sequence Evaluation of Four Pooled-Tissue Normalized Bovine cDNA Libraries and Construction of a Gene Index for Cattle

Timothy P.L. Smith
William M. Grosse
Brad A. Freking
Andrew J. Roberts
Roger T. Stone
Eduardo Casas James E. Wray Joseph White Jennifer Cho Scott C. Fahrenkrug Gary L. Bennett Michael P. Heaton William W. Laegreid Gary A. Rohrer Carol G. Chitko-McKown Geo Pertea Ingeborg Holt
... [+12 authors] ...,
Svetlana Karamycheva
Feng Liang
John Quackenbush
John W. Keele

First Published April 1, 2001

ARTICLE

Identification and Functional Analysis of Mutations in the Hypocretin (Orexin) Genes of Narcoleptic Canines

Marcel Hungs
Jun Fan
Ling Lin
Xiaoyan Lin
Richard A. Maki
Emmanuel Mignot

First Published March 13, 2001

LETTER

Dictyostelium discoideum " > The Complex Repeats of Dictyostelium discoideum

Gernot Glöckner
Karol Szafranski
Thomas Winckler
Theodor Dingermann
Michael A. Quail
Edward Cox
Ludwig Eichinger
Angelika Anna Noegel
André Rosenthal

First Published March 13, 2001

REPORT

Characterization of Clustered MHC-Linked Olfactory Receptor Genes in Human and Mouse

Ruth M. Younger
Claire Amadou
Graeme Bethel
Anke Ehlers
Kirsten Fischer Lindahl
Simon Forbes Roger Horton Sarah Milne Andrew J. Mungall
... [+4 authors] ...,
John Trowsdale
Armin Volz
Andreas Ziegler
Stephan Beck

First Published March 13, 2001

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