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LETTER

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species

  • Guillaume Bourque
  • Pavel A. Pevzner
  • First Published January 1, 2002
METHODS

Gene Expression Analysis with Universal n-mer Arrays

  • R. Michael van Dam
  • Stephen R. Quake
  • First Published January 1, 2002
LETTER

Changes in Gene Expression Profiles in Developing B Cells of Murine Bone Marrow

  • Reinhard Hoffmann
  • Thomas Seidl
  • Martin Neeb
  • Antonius Rolink
  • Fritz Melchers
  • First Published January 1, 2002
METHODS

Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature

  • Soumya Raychaudhuri
  • Jeffrey T. Chang
  • Patrick D. Sutphin
  • Russ B. Altman
  • First Published January 1, 2002
LETTER

Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses" > Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses

  • David A. Wright
  • Daniel F. Voytas
  • First Published December 14, 2001
METHODS

Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis

  • Raad S. Gitan
  • Huidong Shi
  • Chuan-Mu Chen
  • Pearlly S. Yan
  • Tim Hui-Ming Huang
  • First Published December 14, 2001
ARTICLE

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

  • Berend Snel
  • Peer Bork
  • Martijn A. Huynen
  • First Published December 14, 2001
METHODS

Enzymatic Regional Methylation Assay: A Novel Method to Quantify Regional CpG Methylation Density

  • Oliver Galm
  • Michael R. Rountree
  • Kurtis E. Bachman
  • Kam-Wing Jair
  • Stephen B. Baylin
  • James G. Herman
  • First Published December 14, 2001
LETTER

Arabidopsis thaliana: RNAs Are Heterogeneous and Only Two of the Genomic 5S Loci Produce Mature 5S RNA" > Analysis of the 5S RNA Pool in Arabidopsis thaliana: RNAs Are Heterogeneous and Only Two of the Genomic 5S Loci Produce Mature 5S RNA

  • Catherine Cloix
  • Sylvie Tutois
  • Yasushi Yukawa
  • Olivier Mathieu
  • Claudine Cuvillier
  • Marie-Claude Espagnol
  • Georges Picard
  • Sylvette Tourmente
  • First Published December 14, 2001
METHODS

K A/K S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study" > The K A/K S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study

  • Anton Nekrutenko
  • Kateryna D. Makova
  • Wen-Hsiung Li
  • First Published December 14, 2001
ARTICLE

Evolution of Gene Order in the Genomes of Two Related Yeast Species

  • Gilles Fischer
  • Cécile Neuvéglise
  • Pascal Durrens
  • Claude Gaillardin
  • Bernard Dujon
  • First Published December 1, 2001
RESOURCE

Advanced Integrated Mouse YAC Map Including BAC Framework

  • Leonard C. Schalkwyk
  • Brian Cusack
  • Ilona Dunkel
  • Martina Hopp
  • Markus Kramer
  • Stefanie Palczewski Jutta Piefke Sabine Scheel
  • ... [+3 authors] ...,
  • Michael Weiher
  • Gunther Wenske
  • Hans Lehrach
  • Heinz Himmelbauer
  • First Published December 1, 2001
ARTICLE

Genomic Dissection of Genotype × Environment Interactions Conferring Adaptation of Cotton to Arid Conditions

  • Yehoshua Saranga
  • Mónica Menz
  • Chun-Xiao Jiang
  • Robert J. Wright
  • Dan Yakir
  • Andrew H. Paterson
  • First Published December 1, 2001
LETTER

Differential Divergence of Three Human Pseudoautosomal Genes and Their Mouse Homologs: Implications for Sex Chromosome Evolution

  • Fernando Gianfrancesco
  • Remo Sanges
  • Teresa Esposito
  • Sergio Tempesta
  • Ercole Rao
  • Gudrun Rappold
  • ... [+1 authors] ...,
  • Nicoletta Archidiacono
  • Jennifer A.M. Graves
  • Antonino Forabosco
  • Michele D'Urso
  • First Published December 1, 2001
RESOURCE

Toward a Cytological Characterization of the Rice Genome

  • Zhukuan Cheng
  • C. Robin Buell
  • Rod A. Wing
  • Minghong Gu
  • Jiming Jiang
  • First Published December 1, 2001
COMMENTARY

Is There a Bias in Proteome Research?

  • Ralf Mrowka
  • Andreas Patzak
  • Hanspeter Herzel
  • First Published December 1, 2001
LETTER

Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants" > Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants

  • Carlos M. Vicient
  • Ruslan Kalendar
  • Alan H. Schulman
  • First Published December 1, 2001
LETTER

Synechocystis Genomic Sequence" > Identification of Genes Encoding Amino Acid Permeases by Inactivation of Selected ORFs from the Synechocystis Genomic Sequence

  • Marı́a José Quintero
  • Marı́a Luz Montesinos
  • Antonia Herrero
  • Enrique Flores
  • First Published December 1, 2001
LETTER

2 Population" > Identification of Wound Healing/Regeneration Quantitative Trait Loci (QTL) at Multiple Time Points that Explain Seventy Percent of Variance in (MRL/MpJ and SJL/J) Mice F2 Population

  • Godfred L. Masinde
  • Xinmin Li
  • Weikuan Gu
  • Heather Davidson
  • Subburaman Mohan
  • David J. Baylink
  • First Published December 1, 2001
LETTER

Cer Elements and Their Impact on the C. elegans Genome" > Evolutionary History of Cer Elements and Their Impact on the C. elegans Genome

  • Eric W. Ganko
  • Kevin T. Fielman
  • John F. McDonald
  • First Published December 1, 2001
METHODS

Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”

  • Lisa R. Matthews
  • Philippe Vaglio
  • Jérôme Reboul
  • Hui Ge
  • Brian P. Davis
  • James Garrels
  • Sylvie Vincent
  • Marc Vidal
  • First Published December 1, 2001
COMMENTARY

Most of the Human Genome Is Transcribed

  • Gane Ka-Shu Wong
  • Douglas A. Passey
  • Jun Yu
  • First Published December 1, 2001
RESOURCE

GeneLynx: A Gene-Centric Portal to the Human Genome

  • Boris Lenhard
  • William S. Hayes
  • Wyeth W. Wasserman
  • First Published December 1, 2001
LETTER

Twin Priming: A Proposed Mechanism for the Creation of Inversions in L1 Retrotransposition

  • Eric M. Ostertag
  • Haig H. Kazazian
  • First Published December 1, 2001
LETTER

Arabidopsis Shows Scant Collinearity in Gene Order" > Comparative Genomics Between Rice and Arabidopsis Shows Scant Collinearity in Gene Order

  • Hong Liu
  • Ravi Sachidanandam
  • Lincoln Stein
  • First Published December 1, 2001
LETTER

Dlk1–Gtl2 Locus in Three Mammalian Species Reveals Highly Conserved Genomic Elements and Refines Comparison with the Igf2–H19 Region" > Comparative Sequence Analysis of the Imprinted Dlk1–Gtl2 Locus in Three Mammalian Species Reveals Highly Conserved Genomic Elements and Refines Comparison with the Igf2–H19 Region

  • Martina Paulsen
  • Shuji Takada
  • Neil A. Youngson
  • Mehdi Benchaib
  • Carole Charlier
  • Karin Segers
  • Michel Georges
  • Anne C. Ferguson-Smith
  • First Published December 1, 2001
METHODS

Trimming, Weighting, and Grouping SNPs in Human Case-Control Association Studies

  • Josephine Hoh
  • Anja Wille
  • Jurg Ott
  • First Published December 1, 2001
LETTER

Arabidopsis, Caenorhabditis, and Drosophila " > Evolution of Intron/Exon Structure of DEAD Helicase Family Genes in Arabidopsis, Caenorhabditis, and Drosophila

  • Nathalie Boudet
  • Sébastien Aubourg
  • Claire Toffano-Nioche
  • Martin Kreis
  • Alain Lecharny
  • First Published November 12, 2001
LETTER

Genomic Characterization of Recent Human LINE-1 Insertions: Evidence Supporting Random Insertion

  • Igor Ovchinnikov
  • Andrea B. Troxel
  • Gary D. Swergold
  • First Published November 12, 2001
ARTICLE

Drosophila melanogaster: Insights into Structure, Function, and Evolution" > Novel Protein Domains and Repeats in Drosophila melanogaster: Insights into Structure, Function, and Evolution

  • Chris P. Ponting
  • Richard Mott
  • Peer Bork
  • Richard R. Copley
  • First Published November 12, 2001
ARTICLE

A Gene Expression Screen in Zebrafish Embryogenesis

  • Tetsuhiro Kudoh
  • Michael Tsang
  • Neil A. Hukriede
  • Xiongfong Chen
  • Michael Dedekian
  • Christopher J. Clarke Anne Kiang
  • ... [+2 authors] ...,
  • Stephanie Schultz
  • Jonathan A. Epstein
  • Reiko Toyama
  • Igor B. Dawid
  • First Published November 12, 2001
RESOURCE

The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences

  • Neil Hukriede
  • Dan Fisher
  • Jonathan Epstein
  • Lucille Joly
  • Patricia Tellis
  • Yi Zhou Brad Barbazuk Kristine Cox Laura Fenton-Noriega Candace Hersey Jennifer Miles Xiaoming Sheng Anhua Song Rick Waterman Stephen L. Johnson Igor B. Dawid
  • ... [+11 authors] ...,
  • Mario Chevrette
  • Leonard I. Zon
  • John McPherson
  • Marc Ekker
  • First Published November 12, 2001
LETTER

QTL Analysis in a Complex Autopolyploid: Genetic Control of Sugar Content in Sugarcane

  • Ray Ming
  • Sin-Chieh Liu
  • Paul H. Moore
  • James E. Irvine
  • Andrew H. Paterson
  • First Published November 12, 2001
METHODS

A Streamlined Process to Phenotypically Profile Heterologous cDNAs in Parallel Using Yeast Cell-Based Assays

  • Stuart Tugendreich
  • Ed Perkins
  • Joe Couto
  • Peter Barthmaier
  • Dongxu Sun
  • Shawn Tang Suzana Tulac Allen Nguyen Elaine Yeh Amy Mays Ellen Wallace Tom Lila Dave Shivak
  • ... [+8 authors] ...,
  • Mark Prichard
  • Laura Andrejka
  • Raymond Kim
  • Teri Melese
  • First Published November 1, 2001
METHODS

BeadsArray for the Detection of Gene Expression, a High-Throughput Diagnostic Bioassay" > BADGE, BeadsArray for the Detection of Gene Expression, a High-Throughput Diagnostic Bioassay

  • Li Yang
  • Diem K. Tran
  • Xun Wang
  • First Published November 1, 2001
INSIGHT/OUTLOOK

Monoallelic Gene Expression in Mice: Who? When? How? Why?

  • John Schimenti
  • First Published November 1, 2001
CORRIGENDUM

Corrigendum for vol. 11, p. 1736

  • First Published November 1, 2001
METHODS

Genomewide Trapping of Genes that Encode Secreted and Transmembrane Proteins Repressed by Oncogenic Signaling

  • Mathias Gebauer
  • Harald von Melchner
  • Thomas Beckers
  • First Published November 1, 2001
LETTER

Comparing Vertebrate Whole-Genome Shotgun Reads to the Human Genome

  • Rui Chen
  • John B. Bouck
  • George M. Weinstock
  • Richard A. Gibbs
  • First Published November 1, 2001
METHODS

Automated Construction of High-Density Comparative Maps Between Rat, Human, and Mouse

  • Anne E. Kwitek
  • Peter J. Tonellato
  • Dan Chen
  • Jo Gullings-Handley
  • Yongjian Samuel Cheng
  • Simon Twigger Todd E. Scheetz Thomas L. Casavant Monika Stoll Marcelo A. Nobrega
  • ... [+5 authors] ...,
  • Masahide Shiozawa
  • M. Bento Soares
  • Val C. Sheffield
  • Howard J. Jacob
  • First Published November 1, 2001
CORRIGENDUM

Corrigendum for vol. 11, p. 1677

  • First Published November 1, 2001
COMMENTARY

The Human Genome Revealed

  • James D. Watson
  • First Published November 1, 2001
METHODS

Biomarker Identification by Feature Wrappers

  • Momiao Xiong
  • Xiangzhong Fang
  • Jinying Zhao
  • First Published November 1, 2001
LETTER

A Short Pseudoautosomal Region in Laboratory Mice

  • Jo Perry
  • Steve Palmer
  • Anastasia Gabriel
  • Alan Ashworth
  • First Published November 1, 2001
INSIGHT/OUTLOOK

Bringing Out the Best Features of Expression Data

  • Frederick P. Roth
  • First Published November 1, 2001
RESOURCE

Temperature-Modulated Array High-Performance Liquid Chromatography

  • Andreas Premstaller
  • Wenzhong Xiao
  • Herbert Oberacher
  • Matthew O'Keefe
  • David Stern
  • Thomas Willis
  • Christian G. Huber
  • Peter J. Oefner
  • First Published November 1, 2001
METHODS

High-Throughput Variation Detection and Genotyping Using Microarrays

  • David J. Cutler
  • Michael E. Zwick
  • Minerva M. Carrasquillo
  • Christopher T. Yohn
  • Katherine P. Tobin
  • Carl Kashuk Debra J. Mathews
  • ... [+2 authors] ...,
  • Nila A. Shah
  • Evan E. Eichler
  • Janet A. Warrington
  • Aravinda Chakravarti
  • First Published October 15, 2001
LETTER

Pattern and Timing of Gene Duplication in Animal Genomes

  • Robert Friedman
  • Austin L. Hughes
  • First Published October 15, 2001
LETTER

Determinants of CpG Islands: Expression in Early Embryo and Isochore Structure

  • Loïc Ponger
  • Laurent Duret
  • Dominique Mouchiroud
  • First Published October 15, 2001
RESOURCE

Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA" > The Complete Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA

  • Richard E. Broughton
  • Jami E. Milam
  • Bruce A. Roe
  • First Published October 15, 2001
LETTER

The Contribution of Exon-Skipping Events on Chromosome 22 to Protein Coding Diversity

  • Winston A. Hide
  • Vladimir N. Babenko
  • Peter A. van Heusden
  • Cathal Seoighe
  • Janet F. Kelso
  • First Published October 15, 2001
METHODS

SNP Genotyping by Multiplexed Solid-Phase Amplification and Fluorescent Minisequencing

  • Michael H. Shapero
  • Kerstin K. Leuther
  • Anhthu Nguyen
  • Melissa Scott
  • Keith W. Jones
  • First Published October 15, 2001
LETTER

Sequence, Regulation, and Evolution of the Maize 22-kD α Zein Gene Family

  • Rentao Song
  • Victor Llaca
  • Eric Linton
  • Joachim Messing
  • First Published October 15, 2001
LETTER

Identification and Classification of Differentially Expressed Genes in Renal Cell Carcinoma by Expression Profiling on a Global Human 31,500-Element cDNA Array

  • Judith M. Boer
  • Wolfgang K. Huber
  • Holger Sültmann
  • Friederike Wilmer
  • Anja von Heydebreck
  • Stefan Haas Bernhard Korn Bastian Gunawan
  • ... [+3 authors] ...,
  • Andreas Vente
  • Laszlo Füzesi
  • Martin Vingron
  • Annemarie Poustka
  • First Published October 15, 2001
LETTER

t Complex Genomic DNA" > Random Monoallelic Expression of Three Genes Clustered within 60 kb of Mouse t Complex Genomic DNA

  • Yuri Sano
  • Tokihiko Shimada
  • Hiroshi Nakashima
  • Rhonda H. Nicholson
  • James F. Eliason
  • Thomas A. Kocarek
  • Minoru S.H. Ko
  • First Published October 15, 2001
LETTER

Computational Identification of Operons in Microbial Genomes

  • Yu Zheng
  • Joseph D. Szustakowski
  • Lance Fortnow
  • Richard J. Roberts
  • Simon Kasif
  • First Published October 15, 2001
RESOURCE

Spidey: A Tool for mRNA-to-Genomic Alignments

  • Sarah J. Wheelan
  • Deanna M. Church
  • James M. Ostell
  • First Published October 15, 2001
INSIGHT/OUTLOOK

Evolutionarily Conserved Noncoding DNA in the Human Genome: How Much and What For?

  • Miriam H. Meisler
  • First Published October 1, 2001
LETTER

Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins

  • Hedi Hegyi
  • Mark Gerstein
  • First Published October 1, 2001
CORRIGENDUM

Corrigendum for vol. 11, p. 547

  • First Published October 1, 2001
METHODS

Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping

  • Jun S. Liu
  • Chiara Sabatti
  • Jun Teng
  • Bronya J.B. Keats
  • Neil Risch
  • First Published October 1, 2001
METHODS

High-Resolution BAC-Based Map of the Central Portion of Mouse Chromosome 5

  • Jonathan Crabtree
  • Tim Wiltshire
  • Brian Brunk
  • Shaying Zhao
  • Jonathan Schug
  • Christian J. Stoeckert
  • Maja Bucan
  • First Published October 1, 2001
RESOURCE

Chromosome-Specific Single-Locus FISH Probes Allow Anchorage of an 1800-Marker Integrated Radiation-Hybrid/Linkage Map of the Domestic Dog Genome to All Chromosomes

  • Matthew Breen
  • Sophie Jouquand
  • Corinne Renier
  • Cathryn S. Mellersh
  • Christophe Hitte
  • Nigel G. Holmes Angélique Chéron Nicola Suter Françoise Vignaux Anna E. Bristow Catherine Priat E. McCann Catherine André Sam Boundy Paul Gitsham Rachael Thomas Wendy L. Bridge Helen F. Spriggs Ed J. Ryder Alistair Curson
  • ... [+15 authors] ...,
  • Jeff Sampson
  • Elaine A. Ostrander
  • Matthew M. Binns
  • Francis Galibert
  • First Published October 1, 2001
LETTER

Halobacterium Species NRC-1 to Its Extreme Environment through Computational Analysis of Its Genome Sequence" > Understanding the Adaptation of Halobacterium Species NRC-1 to Its Extreme Environment through Computational Analysis of Its Genome Sequence

  • Sean P. Kennedy
  • Wailap Victor Ng
  • Steven L. Salzberg
  • Leroy Hood
  • Shiladitya DasSarma
  • First Published October 1, 2001
INSIGHT/OUTLOOK

Sharing Duties in the Family

  • C.-K. James Shen
  • First Published October 1, 2001
METHODS

Ceramic Capillaries for Use in Microarray Fabrication

  • Reed A. George
  • John Patrick Woolley
  • Paul T. Spellman
  • First Published October 1, 2001
METHODS

DIAN: A Novel Algorithm for Genome Ontological Classification

  • Yannick Pouliot
  • Jing Gao
  • Qiaojuan Jane Su
  • Guozhen Gordon Liu
  • Xuefeng Bruce Ling
  • First Published October 1, 2001
METHODS

SSAHA: A Fast Search Method for Large DNA Databases

  • Zemin Ning
  • Anthony J. Cox
  • James C. Mullikin
  • First Published October 1, 2001
PERSPECTIVE

A Clone-Array Pooled Shotgun Strategy for Sequencing Large Genomes

  • Wei-Wen Cai
  • Rui Chen
  • Richard A. Gibbs
  • Allan Bradley
  • First Published October 1, 2001
LETTER

Evolutionarily Conserved Sequences on Human Chromosome 21

  • Kelly A. Frazer
  • John B. Sheehan
  • Renee P. Stokowski
  • Xiyin Chen
  • Roya Hosseini
  • Jan-Fang Cheng
  • Stephen P.A. Fodor
  • David R. Cox
  • Nila Patil
  • First Published October 1, 2001
METHODS

Mouse BAC Ends Quality Assessment and Sequence Analyses

  • Shaying Zhao
  • Sofiya Shatsman
  • Bola Ayodeji
  • Keita Geer
  • Getahun Tsegaye
  • Margaret Krol Elizabeth Gebregeorgis Alla Shvartsbeyn Daniel Russell Larry Overton Lingxia Jiang George Dimitrov Kevin Tran Jyoti Shetty
  • ... [+9 authors] ...,
  • Joel A. Malek
  • Tamara Feldblyum
  • William C. Nierman
  • Claire M. Fraser
  • First Published September 20, 2001
METHODS

A Human cDNA Expression Library in Yeast Enriched for Open Reading Frames

  • Caterina Holz
  • Angelika Lueking
  • Lara Bovekamp
  • Claudia Gutjahr
  • Natalia Bolotina
  • Hans Lehrach
  • Dolores J. Cahill
  • First Published September 20, 2001
LETTER

Partitioning of Tissue Expression Accompanies Multiple Duplications of the Na+/K+ ATPase α Subunit Gene

  • Fabrizio C. Serluca
  • Arend Sidow
  • John D. Mably
  • Mark C. Fishman
  • First Published September 20, 2001
LETTER

Abundance, Distribution, and Transcriptional Activity of Repetitive Elements in the Maize Genome

  • Blake C. Meyers
  • Scott V. Tingey
  • Michele Morgante
  • First Published September 20, 2001
LETTER

ED1 Gene Causes Anhidrotic Ectodermal Dysplasia in Cattle" > Partial Deletion of the Bovine ED1 Gene Causes Anhidrotic Ectodermal Dysplasia in Cattle

  • Cord Drögemüller
  • Ottmar Distl
  • Tosso Leeb
  • First Published September 20, 2001
LETTER

A Novel Active L1 Retrotransposon Subfamily in the Mouse

  • John L. Goodier
  • Eric M. Ostertag
  • Kevin Du
  • Haig H. Kazazian
  • First Published September 20, 2001
LETTER

Campylobacter jejuni Human Isolates Using a Low-Cost Microarray Reveals Extensive Genetic Diversity" > Whole Genome Comparison of Campylobacter jejuni Human Isolates Using a Low-Cost Microarray Reveals Extensive Genetic Diversity

  • Nick Dorrell
  • Joseph A. Mangan
  • Kenneth G. Laing
  • Jason Hinds
  • Dennis Linton
  • Hasan Al-Ghusein Bart G. Barrell Julian Parkhill
  • ... [+3 authors] ...,
  • Neil G. Stoker
  • Andrey V. Karlyshev
  • Philip D. Butcher
  • Brendan W. Wren
  • First Published September 20, 2001
METHODS

Protein–Protein Interaction Panel Using Mouse Full-Length cDNAs

  • Harukazu Suzuki
  • Yoshifumi Fukunishi
  • Ikuko Kagawa
  • Rintaro Saito
  • Hiroshi Oda
  • Toshinori Endo
  • ... [+1 authors] ...,
  • Shinji Kondo
  • Hidemasa Bono
  • Yasushi Okazaki
  • Yoshihide Hayashizaki
  • First Published September 20, 2001
LETTER

A Comparative Molecular Analysis of Developing Mouse Forelimbs and Hindlimbs Using Serial Analysis of Gene Expression (SAGE)

  • Elliott H. Margulies
  • Sharon L.R. Kardia
  • Jeffrey W. Innis
  • First Published September 20, 2001
INSIGHT/OUTLOOK

Assembling Puzzles from Preassembled Blocks

  • Pavel A. Pevzner
  • First Published September 1, 2001
RESOURCE

Argus—A New Database System for Web-Based Analysis of Multiple Microarray Data Sets

  • Jason Comander
  • Griffin M. Weber
  • Michael A. Gimbrone
  • Guillermo García-Cardeña
  • First Published September 1, 2001
METHODS

Mapping of Quantitative Trait Loci with Knockout/Congenic Strains

  • Valerie J. Bolivar
  • Melloni N. Cook
  • Lorraine Flaherty
  • First Published September 1, 2001
METHODS

Construction of Long-Transcript Enriched cDNA Libraries from Submicrogram Amounts of Total RNAs by a Universal PCR Amplification Method

  • Yulan Piao
  • Naomi T. Ko
  • Meng K. Lim
  • Minoru S.H. Ko
  • First Published September 1, 2001
INSIGHT/OUTLOOK

Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function

  • Dov Greenbaum
  • Nicholas M. Luscombe
  • Ronald Jansen
  • Jiang Qian
  • Mark Gerstein
  • First Published September 1, 2001
LETTER

A Novel γ2-Herpesvirus of the Rhadinovirus 2 Lineage in Chimpanzees

  • Vincent Lacoste
  • Philippe Mauclère
  • Guy Dubreuil
  • John Lewis
  • Marie-Claude Georges-Courbot
  • Antoine Gessain
  • First Published September 1, 2001
ARTICLE

A Proteomic View on Genome-Based Signal Peptide Predictions

  • Haike Antelmann
  • Harold Tjalsma
  • Birgit Voigt
  • Steffen Ohlmeier
  • Sierd Bron
  • Jan Maarten van Dijl
  • Michael Hecker
  • First Published September 1, 2001
METHODS

SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments

  • Thomas Wiehe
  • Steffi Gebauer-Jung
  • Thomas Mitchell-Olds
  • Roderic Guigó
  • First Published September 1, 2001
INSIGHT/OUTLOOK

Looking at Old Tools in New Ways: Using Knockouts as Congenics to Study QTLs

  • Jeremy Peirce
  • First Published September 1, 2001
LETTER

Identification of Alternate Polyadenylation Sites and Analysis of their Tissue Distribution Using EST Data

  • Emmanuel Beaudoing
  • Daniel Gautheret
  • First Published August 16, 2001
METHODS

cis Element/Transcription Factor Analysis (cis/TF): A Method for Discovering Transcription Factor/cis Element Relationships" > cis Element/Transcription Factor Analysis (cis/TF): A Method for Discovering Transcription Factor/cis Element Relationships

  • Kenneth Birnbaum
  • Philip N. Benfey
  • Dennis E. Shasha
  • First Published August 16, 2001
LETTER

Escherichia coli " > Functional Versatility and Molecular Diversity of the Metabolic Map of Escherichia coli

  • Sophia Tsoka
  • Christos A. Ouzounis
  • First Published August 16, 2001
ARTICLE

+-K+-Cl− Cotransporter (NKCC1) in Asthmatic Subjects" > A Novel Method of Gene Transcript Profiling in Airway Biopsy Homogenates Reveals Increased Expression of a Na+-K+-Cl− Cotransporter (NKCC1) in Asthmatic Subjects

  • Gregory M. Dolganov
  • Prescott G. Woodruff
  • Alexander A. Novikov
  • Yifan Zhang
  • Ronald E. Ferrando
  • Richard Szubin
  • John V. Fahy
  • First Published August 16, 2001
METHODS

A Predictive Model for Regulatory Sequences Directing Liver-Specific Transcription

  • William Krivan
  • Wyeth W. Wasserman
  • First Published August 16, 2001
METHODS

Escherichia coli O157:H7 Genome" > Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome

  • Alex Lim
  • Eileen T. Dimalanta
  • Konstantinos D. Potamousis
  • Galex Yen
  • Jennifer Apodoca
  • Chunhong Tao Jieyi Lin Rong Qi John Skiadas Arvind Ramanathan Nicole T. Perna Guy Plunkett Valerie Burland Bob Mau Jeremiah Hackett
  • ... [+10 authors] ...,
  • Frederick R. Blattner
  • Thomas S. Anantharaman
  • Bhubaneswar Mishra
  • David C. Schwartz
  • First Published August 16, 2001
RESOURCE

An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library

  • Matthew D. Clark
  • Steffen Hennig
  • Ralf Herwig
  • Sandy W. Clifton
  • Marco A. Marra
  • Hans Lehrach
  • Stephen L. Johnson
  • the WU-GSC EST Group
  • First Published August 16, 2001
LETTER

Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside" > Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside

  • Nathan J. Bowen
  • John F. McDonald
  • First Published August 16, 2001
METHODS

Assembly of the Working Draft of the Human Genome with GigAssembler

  • W. James Kent
  • David Haussler
  • First Published August 16, 2001
RESOURCE

Creating the Gene Ontology Resource: Design and Implementation

  • The Gene Ontology Consortium
  • First Published August 1, 2001
ARTICLE

Drosophila Reveals Similar Constraints in Intergenic and Intronic Sequences" > Analysis of Conserved Noncoding DNA in Drosophila Reveals Similar Constraints in Intergenic and Intronic Sequences

  • Casey M. Bergman
  • Martin Kreitman
  • First Published August 1, 2001
LETTER

Escherichia coli Proteins" > Divergence of Function in Sequence-Related Groups of Escherichia coli Proteins

  • Laila Alves Nahum
  • Monica Riley
  • First Published August 1, 2001
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