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LETTER

Long-Range Heterogeneity at the 3′ Ends of Human mRNAs

Christian Iseli
Brian J. Stevenson
Sandro J. de Souza
Helena B. Samaia
Anamaria A. Camargo
Kenneth H. Buetow
... [+1 authors] ...,
Robert L. Strausberg
Andrew J.G. Simpson
Philipp Bucher
C. Victor Jongeneel

First Published June 18, 2002

RESOURCE

GFScan: A Gene Family Search Tool at Genomic DNA Level" > `GFScan`: A Gene Family Search Tool at Genomic DNA Level

Zhenyu Xuan
W. Richard McCombie
Michael Q. Zhang

First Published June 18, 2002

METHODS

A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs

Naoki Osato
Masayoshi Itoh
Hideaki Konno
Shinji Kondo
Kazuhiro Shibata
Piero Carninci Toshiyuki Shiraki Akira Shinagawa Takahiro Arakawa
... [+4 authors] ...,
Shoshi Kikuchi
Kouji Sato
Jun Kawai
Yoshihide Hayashizaki

First Published June 18, 2002

METHODS

Single Nucleotide Polymorphism Mapping Using Genome-Wide Unique Sequences

Leslie Y.Y. Chen
Szu-Hsien Lu
Edward S.C. Shih
Ming-Jing Hwang

First Published June 18, 2002

INSIGHT/OUTLOOK

Genomes in Motion

David L. Baillie

First Published June 1, 2002

ARTICLE

Gramineae Genes" > Compositional Gradients in Gramineae Genes

Gane Ka-Shu Wong
Jun Wang
Lin Tao
Jun Tan
JianGuo Zhang
Douglas A. Passey
Jun Yu

First Published June 1, 2002

ARTICLE

Drosophila " > Fourfold Faster Rate of Genome Rearrangement in Nematodes Than in Drosophila

Avril Coghlan
Kenneth H. Wolfe

First Published June 1, 2002

RESOURCE

Danio rerio) Embryonic Inner Ear" > A Subtracted cDNA Library from the Zebrafish (Danio rerio) Embryonic Inner Ear

Roney S. Coimbra
Dominique Weil
Phillipe Brottier
Stéphane Blanchard
Michael Levi
Jean-Pierre Hardelin
Jean Weissenbach
Christine Petit

First Published June 1, 2002

ERRATUM

Erratum for vol. 12, p. 527

First Published June 1, 2002

LETTER

Shannon Information Theoretic Computation of Synonymous Codon Usage Biases in Coding Regions of Human and Mouse Genomes

Barry Zeeberg

First Published June 1, 2002

LETTER

Genomic Evolution of the Long Terminal Repeat Retrotransposons in Hemiascomycetous Yeasts

Cécile Neuvéglise
Horst Feldmann
Elisabeth Bon
Claude Gaillardin
and Serge Casaregola

First Published June 1, 2002

METHODS

A Highly Reproducible, Linear, and Automated Sample Preparation Method for DNA Microarrays

David R. Dorris
Ramesh Ramakrishnan
Dionisios Trakas
Frank Dudzik
Richard Belval
Connie Zhao
Allen Nguyen
Marc Domanus
Abhijit Mazumder

First Published June 1, 2002

METHODS

Myc and Cdc25A as Candidates for the Apmt Mammary Tumor Latency Modifiers" > A Bioinformatics-Based Strategy Identifies c-Myc and Cdc25A as Candidates for the Apmt Mammary Tumor Latency Modifiers

Diana Cozma
Luanne Lukes
Jessica Rouse
Ting Hu Qiu
Edison T. Liu
Kent W. Hunter

First Published June 1, 2002

LETTER

Extended Intermarker Linkage Disequilibrium in the Afrikaners

Diana Hall
Ellen M. Wijsman
J. Louw Roos
Joseph A. Gogos
Maria Karayiorgou

First Published June 1, 2002

LETTER

Tandem Repeats in Protein Coding Regions of Primate Genes

Branko Borštnik
Danilo Pumpernik

First Published June 1, 2002

LETTER

Escherichia coli and Saccharomyces cerevisiae " > Comparison of the Small Molecule Metabolic Enzymes of Escherichia coli and Saccharomyces cerevisiae

Oliver Jardine
Julian Gough
Cyrus Chothia
Sarah A. Teichmann

First Published June 1, 2002

COMMENTARY

Race, Ethnicity, and Genomics: Social Classifications as Proxies of Biological Heterogeneity

Morris W. Foster
Richard R. Sharp

First Published June 1, 2002

LETTER

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

I. King Jordan
Igor B. Rogozin
Yuri I. Wolf
Eugene V. Koonin

First Published May 16, 2002

ARTICLE

Multiplex Three-Dimensional Brain Gene Expression Mapping in a Mouse Model of Parkinson's Disease

Vanessa M. Brown
Alex Ossadtchi
Arshad H. Khan
Simon Yee
Goran Lacan
William P. Melega
Simon R. Cherry
Richard M. Leahy
Desmond J. Smith

First Published May 16, 2002

ARTICLE

Pattern of Organization of Human Mitochondrial Pseudogenes in the Nuclear Genome

Markus Woischnik
Carlos T. Moraes

First Published May 16, 2002

RESOURCE

The Human Genome Browser at UCSC

W. James Kent
Charles W. Sugnet
Terrence S. Furey
Krishna M. Roskin
Tom H. Pringle
Alan M. Zahler
and David Haussler

First Published May 16, 2002

METHODS

An Integrated Computational and Laboratory Approach for Selective Amplification of mRNAs Containing the Adenylate Uridylate-Rich Element Consensus Sequence

Khalid S.A. Khabar
Mohammed Dhalla
Tala Bakheet
Cheikh Sy
Latifa al-Haj

First Published May 16, 2002

PERSPECTIVE

Biomedical Applications and Studies of Molecular Evolution: A Proposal for a Primate Genomic Library Resource

Evan E. Eichler
Pieter J. DeJong

First Published May 1, 2002

COMMENTARY

Time for a Unified System of Mutation Description and Reporting: A Review of Locus-Specific Mutation Databases

Mireille Claustres
Ourania Horaitis
Marijana Vanevski
Richard G.H. Cotton

First Published May 1, 2002

METHODS

RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data" > `RePS:` A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

Jun Wang
Gane Ka-Shu Wong
Peixiang Ni
Yujun Han
Xiangang Huang
Jianguo Zhang Chen Ye Yong Zhang Jianfei Hu Kunlin Zhang Xin Xu Lijuan Cong Hong Lu Xide Ren Xiaoyu Ren Jun He Lin Tao Douglas A. Passey
... [+13 authors] ...,
Jian Wang
Huanming Yang
Jun Yu
Songgang Li

First Published May 1, 2002

ARTICLE

Genes in a Refined Smith-Magenis Syndrome Critical Deletion Interval on Chromosome 17p11.2 and the Syntenic Region of the Mouse

Weimin Bi
Jiong Yan
Paweł Stankiewicz
Sung-Sup Park
Katherina Walz
Cornelius F. Boerkoel Lorraine Potocki Lisa G. Shaffer
... [+3 authors] ...,
Koen Devriendt
Małgorzata J.M. Nowaczyk
Ken Inoue
James R. Lupski

First Published May 1, 2002

LETTER

Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting

Mathieu Blanchette
Martin Tompa

First Published May 1, 2002

INSIGHT/OUTLOOK

What is Finished, and Why Does it Matter

Elaine Mardis
John McPherson
Robert Martienssen
Richard K. Wilson
W. Richard McCombie

First Published May 1, 2002

LETTER

Large-Scale Protein Annotation through Gene Ontology

Hanqing Xie
Alon Wasserman
Zurit Levine
Amit Novik
Vladimir Grebinskiy
Avi Shoshan
Liat Mintz

First Published May 1, 2002

LETTER

A Fine Physical Map of the Rice Chromosome 4

Qiang Zhao
Yu Zhang
Zhukuan Cheng
Mingsheng Chen
Shengyue Wang
Qi Feng Yucheng Huang Ying Li Yesheng Tang Bo Zhou Zhehua Chen Shuliang Yu Jingjie Zhu Xin Hu Jie Mu Kai Ying Pei Hao Lei Zhang Yiqi Lu Lei S. Zhang Yilei Liu Zhen Yu Danlin Fan Qijun Weng Ling Chen Tingting Lu Xiaohui Liu Peixin Jia Tongguo Sun Yongrui Wu Yujun Zhang Ying Lu Can Li Rong Wang Haiyan Lei Tao Li Hao Hu Mei Wu Runquan Zhang Jianping Guan Jia Zhu Gang Fu Minghong Gu Guofan Hong
... [+39 authors] ...,
Yongbiao Xue
Rod Wing
Jiming Jiang
Bin Han

First Published May 1, 2002

LETTER

SCL) — Comparative Analysis of Five Vertebrate SCL Loci" > Transcriptional Regulation of the Stem Cell Leukemia Gene (SCL) — Comparative Analysis of Five Vertebrate SCL Loci

Berthold Göttgens
Linda M. Barton
Michael A. Chapman
Angus M. Sinclair
Bjarne Knudsen
Darren Grafham
... [+1 authors] ...,
James G.R. Gilbert
Jane Rogers
David R. Bentley
Anthony R. Green

First Published May 1, 2002

ARTICLE

Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs

Sung-Sup Park
Paweł Stankiewicz
Weimin Bi
Christine Shaw
Jessica Lehoczky
Ken Dewar
Bruce Birren
James R. Lupski

First Published May 1, 2002

ARTICLE

T. tengcongensis Genome" > A Complete Sequence of the T. tengcongensis Genome

Qiyu Bao
Yuqing Tian
Wei Li
Zuyuan Xu
Zhenyu Xuan
Songnian Hu Wei Dong Jian Yang Yanjiong Chen Yanfen Xue Yi Xu Xiaoqin Lai Li Huang Xiuzhu Dong Yanhe Ma Lunjiang Ling Huarong Tan
... [+12 authors] ...,
Runsheng Chen
Jian Wang
Jun Yu
Huanming Yang

First Published May 1, 2002

ERRATUM

Erratum for vol. 12, p. 584

First Published May 1, 2002

ARTICLE

cis-Regulatory Element Involved in the Heat Shock Response in Caenorhabditis elegans Using Microarray Gene Expression and Computational Methods" > Identification of a Novel cis-Regulatory Element Involved in the Heat Shock Response in Caenorhabditis elegans Using Microarray Gene Expression and Computational Methods

Debraj GuhaThakurta
Lisanne Palomar
Gary D. Stormo
Pat Tedesco
Thomas E. Johnson
David W. Walker
Gordon Lithgow
Stuart Kim
Christopher D. Link

First Published May 1, 2002

LETTER

Rickettsia " > Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia

Hiroyuki Ogata
Stéphane Audic
Chantal Abergel
Pierre-Edouard Fournier
Jean-Michel Claverie

First Published April 12, 2002

LETTER

Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery

Daniel G. Peterson
Stefan R. Schulze
Erica B. Sciara
Scott A. Lee
John E. Bowers
Alexander Nagel
... [+1 authors] ...,
Ning Jiang
Deanne C. Tibbitts
Susan R. Wessler
Andrew H. Paterson

First Published April 12, 2002

LETTER

Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis" > Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

Nathan D. Price
Jason A. Papin
Bernhard Ø. Palsson

First Published April 12, 2002

METHODS

rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites" > `rVista` for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites

Gabriela G. Loots
Ivan Ovcharenko
Lior Pachter
Inna Dubchak
Edward M. Rubin

First Published April 12, 2002

LETTER

Caenorhabditis elegans Genes May Be Pseudogenes" > Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes

Andrew Mounsey
Petra Bauer
Ian A. Hope

First Published April 12, 2002

LETTER

Fugu rubripes and Human 20q" > Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q

Sarah F. Smith
Philip Snell
Frank Gruetzner
Anthony J. Bench
Thomas Haaf
Judith A. Metcalfe
Anthony R. Green
Greg Elgar

First Published April 12, 2002

LETTER

Escherichia coli Genome" > Engineering a Reduced Escherichia coli Genome

Vitaliy Kolisnychenko
Guy Plunkett
Christopher D. Herring
Tamás Fehér
János Pósfai
Frederick R. Blattner
György Pósfai

First Published April 1, 2002

LETTER

Annotated Expressed Sequence Tags and cDNA Microarrays for Studies of Brain and Behavior in the Honey Bee

Charles W. Whitfield
Mark R. Band
Maria F. Bonaldo
Charu G. Kumar
Lei Liu
Jose R. Pardinas
Hugh M. Robertson
M. Bento Soares
Gene E. Robinson

First Published April 1, 2002

LETTER

Comparative Analysis of Chloroplast Genomes: Functional Annotation, Genome-Based Phylogeny, and Deduced Evolutionary Patterns

Javier De Las Rivas
Juan Jose Lozano
Angel R. Ortiz

First Published April 1, 2002

INSIGHT/OUTLOOK

Functional Diversity of Mx Proteins: Variations on a Theme of Host Resistance to Infection

Seung-Hwan Lee
Silvia M. Vidal

First Published April 1, 2002

LETTER

Complex SNP-Based Haplotypes in Three Human Helicases: Implications for Cancer Association Studies

Dimitra Trikka
Zhe Fang
Alex Renwick
Sally H. Jones
Ranajit Chakraborty
Marek Kimmel
David L. Nelson

First Published April 1, 2002

ARTICLE

M. acetivorans Reveals Extensive Metabolic and Physiological Diversity" > The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity

James E. Galagan
Chad Nusbaum
Alice Roy
Matthew G. Endrizzi
Pendexter Macdonald
Will FitzHugh Sarah Calvo Reinhard Engels Serge Smirnov Deven Atnoor Adam Brown Nicole Allen Jerome Naylor Nicole Stange-Thomann Kurt DeArellano Robin Johnson Lauren Linton Paul McEwan Kevin McKernan Jessica Talamas Andrea Tirrell Wenjuan Ye Andrew Zimmer Robert D. Barber Isaac Cann David E. Graham David A. Grahame Adam M. Guss Reiner Hedderich Cheryl Ingram-Smith H. Craig Kuettner Joseph A. Krzycki John A. Leigh Weixi Li Jinfeng Liu Biswarup Mukhopadhyay John N. Reeve Kerry Smith Timothy A. Springer Lowell A. Umayam Owen White Robert H. White Everly Conway de Macario James G. Ferry Ken F. Jarrell Hua Jing Alberto J.L. Macario Ian Paulsen Matthew Pritchett Kevin R. Sowers Ronald V. Swanson
... [+46 authors] ...,
Steven H. Zinder
Eric Lander
William W. Metcalf
Bruce Birren

First Published April 1, 2002

INSIGHT/OUTLOOK

New Twists on the Epigenetics of CpG Islands

Rolf Ohlsson
Chandrasekhar Kanduri

First Published April 1, 2002

LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

Chiara Romualdi
David Balding
Ivane S. Nasidze
Gregory Risch
Myles Robichaux
Stephen T. Sherry
Mark Stoneking
Mark A. Batzer
Guido Barbujani

First Published April 1, 2002

METHODS

Predicting Gene Ontology Functions from ProDom and CDD Protein Domains

Jonathan Schug
Sharon Diskin
Joan Mazzarelli
Brian P. Brunk
Christian J. Stoeckert

First Published April 1, 2002

LETTER

Epistatic circler Mouse Is Caused by Phenotypic Interaction of One Recessive Gene and Three Modifier Genes" > Vestibular Dysfunction in the Epistatic circler Mouse Is Caused by Phenotypic Interaction of One Recessive Gene and Three Modifier Genes

Kim Cryns
Michiel P. Van Spaendonck
Kris Flothmann
Arjan M. van Alphen
Paul H. Van De Heyning
Jean-Pierre Timmermans
Chris I. De Zeeuw
Guy Van Camp

First Published March 20, 2002

LETTER

Mx Gene" > Polymorphisms and the Differential Antiviral Activity of the Chicken Mx Gene

Jae-Hong Ko
Hee-Kyung Jin
Atsushi Asano
Ayato Takada
Ai Ninomiya
Hiroshi Kida Hironao Hokiyama Mutsuo Ohara
... [+3 authors] ...,
Masaoki Tsuzuki
Masahide Nishibori
Makoto Mizutani
Tomomasa Watanabe

First Published March 20, 2002

LETTER

A Quantitative Trait Locus Influencing Anxiety in the Laboratory Rat

Alberto Fernández-Teruel
Rosa M. Escorihuela
Jeffrey A. Gray
Raúl Aguilar
Luis Gil
Lydia Giménez-Llort Adolf Tobeña Amarjit Bhomra Alison Nicod
... [+4 authors] ...,
Richard Mott
Peter Driscoll
Gerard R. Dawson
Jonathan Flint

First Published March 20, 2002

RESOURCE

BLAT—The `BLAST`-Like Alignment Tool" > `BLAT`—The `BLAST`-Like Alignment Tool

W. James Kent

First Published March 20, 2002

LETTER

Potato Virus A: Virus Genome-Wide Map of Sites Essential for Virus Propagation" > Functional Genomics on Potato Virus A: Virus Genome-Wide Map of Sites Essential for Virus Propagation

Tuija Kekarainen
Harri Savilahti
Jari P.T. Valkonen

First Published March 20, 2002

ARTICLE

A Genome-Wide Screen for Normally Methylated Human CpG Islands That Can Identify Novel Imprinted Genes

Liora Z. Strichman-Almashanu
Richard S. Lee
Patrick O. Onyango
Elizabeth Perlman
Folke Flam
Matthew B. Frieman
Andrew P. Feinberg

First Published March 20, 2002

LETTER

Accounting for Human Polymorphisms Predicted to Affect Protein Function

Pauline C. Ng
Steven Henikoff

First Published March 1, 2002

LETTER

A Tale of Two Genotypes: Consistency between Two High-Throughput Genotyping Centers

Daniel E. Weeks
Yvette P. Conley
Robert E. Ferrell
Tammy S. Mah
Michael B. Gorin

First Published March 1, 2002

LETTER

Domain-Level Differences in Microsatellite Distribution and Content Result from Different Relative Rates of Insertion and Deletion Mutations

David Metzgar
Li Liu
Christian Hansen
Kevin Dybvig
Christopher Wills

First Published March 1, 2002

LETTER

The Human Ribosomal Protein Genes: Sequencing and Comparative Analysis of 73 Genes

Maki Yoshihama
Tamayo Uechi
Shuichi Asakawa
Kazuhiko Kawasaki
Seishi Kato
Sayomi Higa Noriko Maeda
... [+2 authors] ...,
Shinsei Minoshima
Tatsuo Tanaka
Nobuyoshi Shimizu
Naoya Kenmochi

First Published March 1, 2002

METHODS

Consensus Promoter Identification in the Human Genome Utilizing Expressed Gene Markers and Gene Modeling

Rongxiang Liu
David J. States

First Published March 1, 2002

RESOURCE

Cross-Referencing Eukaryotic Genomes: TIGR Orthologous Gene Alignments (TOGA)

Yuandan Lee
Razvan Sultana
Geo Pertea
Jennifer Cho
Svetlana Karamycheva
Jennifer Tsai Babak Parvizi Foo Cheung Valentin Antonescu
... [+4 authors] ...,
Joseph White
Ingeborg Holt
Feng Liang
John Quackenbush

First Published March 1, 2002

RESOURCE

T. pallidum DNA in E. coli " > BAC Library of T. pallidum DNA in E. coli

David Šmajs
Matthew McKevitt
Ling Wang
Jerrilyn K. Howell
Steven J. Norris
Timothy Palzkill
George M. Weinstock

First Published March 1, 2002

LETTER

Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats

Carlos A. Driscoll
Marilyn Menotti-Raymond
George Nelson
David Goldstein
Stephen J. O'Brien

First Published March 1, 2002

ARTICLE

Identification of Multiple Genetic Loci Linked to the Propensity for “Behavioral Despair” in Mice

Takeo Yoshikawa
Akiko Watanabe
Yuichi Ishitsuka
Akihiro Nakaya
Noriaki Nakatani

First Published March 1, 2002

RESOURCE

Gene3D : Structural Assignment for Whole Genes and Genomes Using the CATH Domain Structure Database" > `Gene3D`: Structural Assignment for Whole Genes and Genomes Using the CATH Domain Structure Database

Daniel W.A. Buchan
Adrian J. Shepherd
David Lee
Frances M.G. Pearl
Stuart C.G. Rison
Janet M. Thornton
Christine A. Orengo

First Published March 1, 2002

METHODS

Computational Detection and Location of Transcription Start Sites in Mammalian Genomic DNA

Thomas A. Down
Tim J. P. Hubbard

First Published March 1, 2002

METHODS

Drosophila Early Developmental Enhancers" > Extraction of Functional Binding Sites from Unique Regulatory Regions: The Drosophila Early Developmental Enhancers

Dmitri A. Papatsenko
Vsevolod J. Makeev
Alex P. Lifanov
Mireille Régnier
Anna G. Nazina
Claude Desplan

First Published February 15, 2002

LETTER

Computational Comparison of Human Genomic Sequence Assemblies for a Region of Chromosome 4

Colin A.M. Semple
Stewart W. Morris
David J. Porteous
Kathryn L. Evans

First Published February 15, 2002

METHODS

Novel Fluorescence Labeling and High-Throughput Assay Technologies for In Vitro Analysis of Protein Interactions

Nobuhide Doi
Hideaki Takashima
Masataka Kinjo
Kyoko Sakata
Yuko Kawahashi
Yuko Oishi Rieko Oyama
... [+2 authors] ...,
Etsuko Miyamoto-Sato
Tatsuya Sawasaki
Yaeta Endo
Hiroshi Yanagawa

First Published February 15, 2002

LETTER

Processed Pseudogenes of Human Endogenous Retroviruses Generated by LINEs: Their Integration, Stability, and Distribution

Adam Pavlíček
Jan Pačes
Daniel Elleder
Jiří Hejnar

First Published February 15, 2002

LETTER

Drosophila melanogaster Genome" > Recombination Rate and the Distribution of Transposable Elements in the Drosophila melanogaster Genome

Carène Rizzon
Gabriel Marais
Manolo Gouy
Christian Biémont

First Published February 15, 2002

METHODS

Oligonucleotide Arrays for High-Throughput SNPs Detection in the MHC Class I Genes: HLA-B as a Model System

Zhen Guo
Mark S. Gatterman
Lee Hood
John A. Hansen
Effie W. Petersdorf

First Published February 15, 2002

LETTER

Exploration of Novel Motifs Derived from Mouse cDNA Sequences

Hideya Kawaji
Christian Schönbach
Yo Matsuo
Jun Kawai
Yasushi Okazaki
Yoshihide Hayashizaki
Hideo Matsuda

First Published February 15, 2002

METHODS

High-Density Cell Microarrays for Parallel Functional Determinations

C. Wilson Xu

First Published February 15, 2002

LETTER

In Vivo Regulation of Human Skeletal Muscle Gene Expression by Thyroid Hormone

Karine Clément
Nathalie Viguerie
Maximilian Diehn
Ash Alizadeh
Pierre Barbe
Claire Thalamas
... [+1 authors] ...,
John D. Storey
Patrick O. Brown
Greg S. Barsh
Dominique Langin

First Published February 1, 2002

LETTER

V-SINEs: A New Superfamily of Vertebrate SINEs That Are Widespread in Vertebrate Genomes and Retain a Strongly Conserved Segment within Each Repetitive Unit

Ikuo Ogiwara
Masaki Miya
Kazuhiko Ohshima
Norihiro Okada

First Published February 1, 2002

ARTICLE

High-Throughput Imaging of Brain Gene Expression

Vanessa M. Brown
Alex Ossadtchi
Arshad H. Khan
Simon R. Cherry
Richard M. Leahy
Desmond J. Smith

First Published February 1, 2002

LETTER

Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22

Paul M. Harrison
Hedi Hegyi
Suganthi Balasubramanian
Nicholas M. Luscombe
Paul Bertone
Nathaniel Echols
Ted Johnson
Mark Gerstein

First Published February 1, 2002

ARTICLE

DGAT1 Gene with Major Effect on Milk Yield and Composition" > Positional Candidate Cloning of a QTL in Dairy Cattle: Identification of a Missense Mutation in the Bovine DGAT1 Gene with Major Effect on Milk Yield and Composition

Bernard Grisart
Wouter Coppieters
Frédéric Farnir
Latifa Karim
Christine Ford
Paulette Berzi Nadine Cambisano Myriam Mni Suzanne Reid
... [+4 authors] ...,
Patricia Simon
Richard Spelman
Michel Georges
Russell Snell

First Published February 1, 2002

RESOURCE

viewGene : A Graphical Tool for Polymorphism Visualization and Characterization" > `viewGene`: A Graphical Tool for Polymorphism Visualization and Characterization

Carl Kashuk
Sanghamitra SenGupta
Evan Eichler
Aravinda Chakravarti

First Published February 1, 2002

ARTICLE

Metallochaperones and Metal-Transporting ATPases: A Comparative Analysis of Sequences and Structures

Fabio Arnesano
Lucia Banci
Ivano Bertini
Simone Ciofi-Baffoni
Elena Molteni
David L. Huffman
Thomas V. O'Halloran

First Published February 1, 2002

LETTER

Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data

Andreas Wagner

First Published February 1, 2002

INSIGHT/OUTLOOK

Why Names

Francesc Calafell
David Comas
Jaume Bertranpetit

First Published February 1, 2002

LETTER

Control Genes and Variability: Absence of Ubiquitous Reference Transcripts in Diverse Mammalian Expression Studies

Peter D. Lee
Robert Sladek
Celia M.T. Greenwood
Thomas J. Hudson

First Published February 1, 2002

METHODS

Fully Automatic Quantification of Microarray Image Data

Ajay N. Jain
Taku A. Tokuyasu
Antoine M. Snijders
Richard Segraves
Donna G. Albertson
Daniel Pinkel

First Published February 1, 2002

INSIGHT/OUTLOOK

Pixelating the Brain

Andrew S. Peterson

First Published February 1, 2002

RESOURCE

A Nomenclature System for the Tree of Human Y-Chromosomal Binary Haplogroups

The Y Chromosome Consortium

First Published February 1, 2002

METHODS

Linker-Mediated Recombinational Subcloning of Large DNA Fragments Using Yeast

Christopher K. Raymond
Elizabeth H. Sims
Maynard V. Olson

First Published January 1, 2002

LETTER

Genomic Analysis of the Olfactory Receptor Region of the Mouse and Human T-Cell Receptor α/δ Loci

Robert P. Lane
Jared C. Roach
Inyoul Y. Lee
Cecilie Boysen
Arian Smit
Barbara J. Trask
Leroy Hood

First Published January 1, 2002

LETTER

Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions

Tobias Doerks
Richard R. Copley
Jörg Schultz
Chris P. Ponting
Peer Bork

First Published January 1, 2002

COMMENTARY

Testing the Parsimony Test of Genome Duplications: A Counterexample

Xun Gu
Wei Huang

First Published January 1, 2002

LETTER

Relating Whole-Genome Expression Data with Protein-Protein Interactions

Ronald Jansen
Dov Greenbaum
Mark Gerstein

First Published January 1, 2002

LETTER

Min 2 (Mom2) Locus, a New Mutation That Influences Apc-Induced Intestinal Neoplasia" > Identification of the Modifier of Min 2 (Mom2) Locus, a New Mutation That Influences Apc-Induced Intestinal Neoplasia

Karen A. Silverman
Revati Koratkar
Linda D. Siracusa
Arthur M. Buchberg

First Published January 1, 2002

LETTER

Expression Profiles of 290 ESTs Mapped to Chromosome 3 in Human Epithelial Ovarian Cancer Cell Lines Using DNA Expression Oligonucleotide Microarrays

Emily N. Manderson
Anne-Marie Mes-Masson
Jaroslav Novak
Peter D. Lee
Diane Provencher
Thomas J. Hudson
Patricia N. Tonin

First Published January 1, 2002

METHODS

Finding Genes in the C2C12 Osteogenic Pathway by k-Nearest-Neighbor Classification of Expression Data

Joachim Theilhaber
Timothy Connolly
Sergio Roman-Roman
Steven Bushnell
Amanda Jackson
Kathy Call
Teresa Garcia
Roland Baron

First Published January 1, 2002

LETTER

KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms" > Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

Moira Crosier
Luigi Viggiano
Jane Guy
Doriana Misceo
Robert Stones
Wenbin Wei Tom Hearn
... [+2 authors] ...,
Mario Ventura
Nicoletta Archidiacono
Mariano Rocchi
Michael S. Jackson

First Published January 1, 2002

LETTER

Drosophila melanogaster, and the Malaria Mosquito, Anopheles gambiae " > A Comparative Genomic Analysis of Two Distant Diptera, the Fruit Fly, Drosophila melanogaster, and the Malaria Mosquito, Anopheles gambiae

Viacheslav N. Bolshakov
Pantelis Topalis
Claudia Blass
Elena Kokoza
Alessandra della Torre
Fotis C. Kafatos
Christos Louis

First Published January 1, 2002

METHODS

ARACHNE: A Whole-Genome Shotgun Assembler

Serafim Batzoglou
David B. Jaffe
Ken Stanley
Jonathan Butler
Sante Gnerre
Evan Mauceli
Bonnie Berger
Jill P. Mesirov
Eric S. Lander

First Published January 1, 2002

REPORT

3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome " > Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome

Udaya DeSilva
Laura Elnitski
Jacquelyn R. Idol
Johannah L. Doyle
Weiniu Gan
James W. Thomas Scott Schwartz Nicole L. Dietrich Stephen M. Beckstrom-Sternberg Jennifer C. McDowell Robert W. Blakesley Gerard G. Bouffard
... [+7 authors] ...,
Pamela J. Thomas
Jeffrey W. Touchman
Webb Miller
Eric D. Green

First Published January 1, 2002

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