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LETTER

Selecting for Functional Alternative Splices in ESTs

  • First Published December 1, 2002
METHODS

A Novel Method for SNP Detection Using a New Duplex-Specific Nuclease From Crab Hepatopancreas

  • First Published December 1, 2002
LETTER

Diversity in Nucleotide Binding Site–Leucine-Rich Repeat Genes in Cereals

  • First Published December 1, 2002
METHODS

Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies

  • First Published December 1, 2002
LETTER

The Human Hox-bearing Chromosome Regions Did Arise by Block or Chromosome (or Even Genome) Duplications

  • First Published December 1, 2002
METHODS

Highly Efficient Modification of Bacterial Artificial Chromosomes (BACs) Using Novel Shuttle Vectors Containing the R6Kγ Origin of Replication

  • First Published December 1, 2002
METHODS

A Unified Framework for Mapping Quantitative Trait Loci in Bivalent Tetraploids Using Single-dose Restriction Fragments: A Case Study from Alfalfa

  • First Published December 1, 2002
LETTER

Distribution and Characterization of Regulatory Elements in the Human Genome

  • First Published December 1, 2002
LETTER

Haplotype and Linkage Disequilibrium Architecture for Human Cancer-Associated Genes

  • First Published November 12, 2002
LETTER

FMO3 Gene Underlies Fishy Off-Flavor in Cow's Milk" > A Nonsense Mutation in the FMO3 Gene Underlies Fishy Off-Flavor in Cow's Milk

  • First Published November 12, 2002
LETTER

Drosophila " > Retroposed New Genes Out of the X in Drosophila

  • First Published November 12, 2002
RESOURCE

Assembly, Verification, and Initial Annotation of the NIA Mouse 7.4K cDNA Clone Set

  • First Published November 12, 2002
LETTER

Gene Content and Function of the Ancestral Chromosome Fusion Site in Human Chromosome 2q13–2q14.1 and Paralogous Regions

  • First Published November 1, 2002
METHODS

Detection of Peptides, Proteins, and Drugs That Selectively Interact With Protein Targets

  • First Published November 1, 2002
LETTER

Genome Dynamics in Aging Mice

  • First Published November 1, 2002
METHODS

Arabidopsis and Rice" > The Automatic Detection of Homologous Regions (ADHoRe) and Its Application to Microcolinearity Between Arabidopsis and Rice

  • First Published November 1, 2002
LETTER

Segmental Polymorphisms in the Proterminal Regions of a Subset of Human Chromosomes

  • First Published November 1, 2002
LETTER

Signatures of Domain Shuffling in the Human Genome

  • First Published November 1, 2002
LETTER

Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons

  • First Published November 1, 2002
ARTICLE

Structural Characterization of the Human Proteome

  • First Published November 1, 2002
METHODS

Gene Expression Analysis Using Oligonucleotide Arrays Produced by Maskless Photolithography

  • First Published November 1, 2002
LETTER

In Silico Model-Driven Assessment of the Effects of Single Nucleotide Polymorphisms (SNPs) on Human Red Blood Cell Metabolism

  • First Published November 1, 2002
LETTER

Genomic Structure and Evolution of the Ancestral Chromosome Fusion Site in 2q13–2q14.1 and Paralogous Regions on Other Human Chromosomes

  • First Published November 1, 2002
ERRATUM

Erratum for vol. 12, p. 1015

  • First Published November 1, 2002
METHODS

Genomic Signature Tags (GSTs): A System for Profiling Genomic DNA

  • First Published November 1, 2002
METHODS

SNPSTRs: Empirically Derived, Rapidly Typed, Autosomal Haplotypes for Inference of Population History and Mutational Processes

  • First Published November 1, 2002
LETTER

Novel PAX6 Binding Sites in the Human Genome and the Role of Repetitive Elements in the Evolution of Gene Regulation

  • First Published November 1, 2002
LETTER

Identification of New Herpesvirus Gene Homologs in the Human Genome

  • First Published October 15, 2002
LETTER

Identification of Candidate Genes Regulating HDL Cholesterol Using a Chromosomal Region Expression Array

  • First Published October 15, 2002
METHODS

Comparative Analysis of Multiple Genome-Scale Data Sets

  • First Published October 1, 2002
RESOURCE

AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands" > An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands

  • First Published October 1, 2002
METHODS

Using Text Analysis to Identify Functionally Coherent Gene Groups

  • First Published October 1, 2002
METHODS

Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation

  • First Published October 1, 2002
ARTICLE

Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome

  • First Published October 1, 2002
ERRATUM

Erratum for vol. 12, p. 1159

  • First Published October 1, 2002
RESOURCE

The Generic Genome Browser: A Building Block for a Model Organism System Database

  • First Published October 1, 2002
LETTER

Identification and Confirmation of a Module of Coexpressed Genes

  • First Published October 1, 2002
RESOURCE

The Bioperl Toolkit: Perl Modules for the Life Sciences

  • First Published October 1, 2002
REVIEW

Mammalian Retroelements

  • First Published October 1, 2002
LETTER

Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes

  • First Published October 1, 2002
LETTER

Conservation of the Biotin Regulon and the BirA Regulatory Signal in Eubacteria and Archaea

  • First Published October 1, 2002
RESOURCE

CDART: Protein Homology by Domain Architecture

  • First Published October 1, 2002
LETTER

Inferring Domain–Domain Interactions From Protein–Protein Interactions

  • First Published October 1, 2002
LETTER

Molecular Characterization of a Chromosomal Rearrangement Involved in the Adaptive Evolution of Yeast Strains

  • First Published October 1, 2002
LETTER

Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison

  • First Published September 13, 2002
LETTER

Xylella fastidiosa Strains Reveal Novel Biological Insights" > Draft Sequencing and Comparative Genomics of Xylella fastidiosa Strains Reveal Novel Biological Insights

  • First Published September 13, 2002
LETTER

Mosaic Organization of Orthologous Sequences in Grass Genomes

  • First Published September 13, 2002
LETTER

Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals

  • First Published September 13, 2002
LETTER

Cryptococcus neoformans " > Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans

  • First Published September 1, 2002
LETTER

Comparative Genomic Sequence Analysis of the Human Chromosome 21 Down Syndrome Critical Region

  • First Published September 1, 2002
LETTER

Impact of the Presence of Paralogs on Sequence Divergence in a Set of Mouse-Human Orthologs

  • First Published September 1, 2002
RESOURCE

Conditionally Amplifiable BACs: Switching From Single-Copy to High-Copy Vectors and Genomic Clones

  • First Published September 1, 2002
LETTER

Splice Variation in Mouse Full-Length cDNAs Identified by Mapping to the Mouse Genome

  • First Published September 1, 2002
LETTER

Arabidopsis thaliana " > Patterns of Positive Selection in the Complete NBS-LRR Gene Family of Arabidopsis thaliana

  • First Published September 1, 2002
LETTER

Drosophila melanogaster " > Genome-Wide Analysis of the Odorant-Binding Protein Gene Family in Drosophila melanogaster

  • First Published September 1, 2002
LETTER

Zea mays " > Methylation-Spanning Linker Libraries Link Gene-Rich Regions and Identify Epigenetic Boundaries in Zea mays

  • First Published September 1, 2002
METHODS

iFRET: An Improved Fluorescence System for DNA-Melting Analysis

  • First Published September 1, 2002
METHODS

cis-Regulatory Element Clusters in Orthologous and Coordinately Controlled Genes" > Detection and Visualization of Compositionally Similar cis-Regulatory Element Clusters in Orthologous and Coordinately Controlled Genes

  • First Published September 1, 2002
LETTER

Deterministic Mutation Rate Variation in the Human Genome

  • First Published September 1, 2002
METHODS

GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming

  • First Published September 1, 2002
METHODS

Mutation Detection Using Mass Spectrometric Separation of Tiny Oligonucleotide Fragments

  • First Published August 22, 2002
LETTER

Active Alu Element “A-Tails”: Size Does Matter

  • First Published August 21, 2002
RESOURCE

Cryptococcus neoformans " > Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans

  • First Published August 21, 2002
LETTER

Tetraodon Chromosomes" > Four-Hundred Million Years of Conserved Synteny of Human Xp and Xq Genes on Three Tetraodon Chromosomes

  • First Published August 21, 2002
EDITORIAL

Genome Research " > New Editors Join Genome Research

  • First Published August 1, 2002
LETTER

Minimal Introns Are Not “Junk”

  • First Published August 1, 2002
ERRATUM

Erratum for vol. 12, p. 701

  • First Published August 1, 2002
LETTER

Functional Cloning, Sorting, and Expression Profiling of Nucleic Acid-Binding Proteins

  • First Published August 1, 2002
LETTER

Predicting Protein Cellular Localization Using a Domain Projection Method

  • First Published August 1, 2002
LETTER

Drosophila Genome: Evaluation of Potential Dimerization Partners" > B-ZIP Proteins Encoded by the Drosophila Genome: Evaluation of Potential Dimerization Partners

  • First Published August 1, 2002
RESOURCE

Drosophila Gene Collection: Identification of Putative Full-Length cDNAs for 70% of D. melanogaster Genes" > The Drosophila Gene Collection: Identification of Putative Full-Length cDNAs for 70% of D. melanogaster Genes

  • First Published August 1, 2002
LETTER

Conserved Disruptions in the Predicted Coiled-Coil Domains of Eukaryotic SMC Complexes: Implications for Structure and Function

  • First Published August 1, 2002
INSIGHT/OUTLOOK

Intraproteomic Networks: New Forays Into Predicting Interaction Partners

  • First Published August 1, 2002
METHODS

Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species

  • First Published August 1, 2002
LETTER

2 Intercross" > Voluntary Ethanol Consumption by Mice: Genome-Wide Analysis of Quantitative Trait Loci and Their Interactions in a C57BL/6ByJ × 129P3/J F2 Intercross

  • First Published August 1, 2002
LETTER

Saccharomyces cerevisiae " > Parallel Identification of New Genes in Saccharomyces cerevisiae

  • First Published August 1, 2002
METHODS

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes

  • First Published July 19, 2002
LETTER

CpG Methylation Modifies the Genetic Stability of Cloned Repeat Sequences

  • First Published July 19, 2002
LETTER

Large-Scale Proteomic Analysis of the Human Spliceosome

  • First Published July 19, 2002
LETTER

Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast" > Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast

  • First Published July 19, 2002
RESOURCE

Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data

  • First Published July 19, 2002
LETTER

Drosophila Embryos" > Profiling Patterned Transcripts in Drosophila Embryos

  • First Published July 1, 2002
METHODS

Validation of DNA Sequences Using Mass Spectrometry Coupled with Nucleoside Mass Tagging

  • First Published July 1, 2002
LETTER

A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History

  • First Published July 1, 2002
INSIGHT/OUTLOOK

Fly Factory

  • First Published July 1, 2002
LETTER

Alu-Containing Exons are Alternatively Spliced" > Alu-Containing Exons are Alternatively Spliced

  • First Published July 1, 2002
LETTER

Ian)-Related Gene" > Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene

  • First Published July 1, 2002
METHODS

Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space

  • First Published July 1, 2002
LETTER

Arabidopsis " > Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis

  • First Published July 1, 2002
INSIGHT/OUTLOOK

Genomics: More Than the Sum of the Parts

  • First Published July 1, 2002
ARTICLE

Computation-Based Discovery of Related Transcriptional Regulatory Modules and Motifs Using an Experimentally Validated Combinatorial Model

  • First Published July 1, 2002
LETTER

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

  • First Published July 1, 2002
METHODS

Caenorhabditis elegans " > High-Throughput Gene Mapping in Caenorhabditis elegans

  • First Published July 1, 2002
LETTER

Transcript Profiling of Functionally Related Groups of Genes During Conditional Differentiation of a Mammalian Cochlear Hair Cell Line

  • First Published July 1, 2002
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