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Your search for returned 6,373 results

LETTER

GH-IGF axis confer susceptibilityto lung cancer" > Variants in the GH-IGF axis confer susceptibilityto lung cancer

Matthew F. Rudd
Emily L. Webb
Athena Matakidou
Gabrielle S. Sellick
Richard D. Williams
Helen Bridle
Tim Eisen
Richard S. Houlston

First Published June 1, 2006

LETTER

Functional noncoding sequences derived from SINEs in the mammalian genome

Hidenori Nishihara
Arian F.A. Smit
Norihiro Okada

First Published May 22, 2006

LETTER

Widespread genome duplications throughout the history of flowering plants

Liying Cui
P. Kerr Wall
James H. Leebens-Mack
Bruce G. Lindsay
Douglas E. Soltis
Jeff J. Doyle Pamela S. Soltis John E. Carlson Kathiravetpilla Arumuganathan
... [+4 authors] ...,
Abdelali Barakat
Victor A. Albert
Hong Ma
Claude W. dePamphilis

First Published May 15, 2006

LETTER

Plasmodium: Intron loss/gain mutation rates and intron number" > Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number

Scott William Roy
Daniel L. Hartl

First Published May 15, 2006

Methods

Arabidopsis" > High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis

Marilyn A.L. West
Hans van Leeuwen
Alexander Kozik
Daniel J. Kliebenstein
R.W. Doerge
Dina A. St. Clair
Richard W. Michelmore

First Published May 15, 2006

LETTER

An epigenetic state associated with areas of gene duplication

Alexander A. Gimelbrant
Andrew Chess

First Published May 10, 2006

LETTER

Evolutionary turnover of mammalian transcription start sites

Martin C. Frith
Jasmina Ponjavic
David Fredman
Chikatoshi Kai
Jun Kawai
Piero Carninci
Yoshihide Hayshizaki
Albin Sandelin

First Published May 10, 2006

LETTER

How reliable are empirical genomic scans for selective sweeps?

Kosuke M. Teshima
Graham Coop
Molly Przeworski

First Published May 10, 2006

LETTER

Genomic islands of differentiation between house mouse subspecies

Bettina Harr

First Published May 10, 2006

Methods

ASEtrap: A biological method for speeding up the exploration of spliceomes

Gilbert Thill
Vanina Castelli
Sophie Pallud
Marcel Salanoubat
Patrick Wincker
Pierre de la Grange
Didier Auboeuf
Vincent Schächter
Jean Weissenbach

First Published May 8, 2006

RESOURCE

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

Ryan D. Morin
Elbert Chang
Anca Petrescu
Nancy Liao
Malachi Griffith
Robert Kirkpatrick Yaron S. Butterfield Alice C. Young Jeffrey Stott Sarah Barber Ryan Babakaiff Mark C. Dickson Corey Matsuo David Wong George S. Yang Duane E. Smailus Keith D. Wetherby Peggy N. Kwong Jane Grimwood Charles P. Brinkley Mabel Brown-John Natalie D. Reddix-Dugue Michael Mayo Jeremy Schmutz Jaclyn Beland Morgan Park Susan Gibson Teika Olson Gerard G. Bouffard Miranda Tsai Ruth Featherstone Steve Chand Asim S. Siddiqui Wonhee Jang Ed Lee Steven L. Klein Robert W. Blakesley Barry R. Zeeberg Sudarshan Narasimhan John N. Weinstein Christa Prange Pennacchio Richard M. Myers Eric D. Green Lukas Wagner
... [+39 authors] ...,
Daniela S. Gerhard
Marco A. Marra
Steven J.M. Jones
Robert A. Holt

First Published May 3, 2006

RESOURCE

Iterative gene prediction and pseudogene removal improves genome annotation

Marijke J. van Baren
Michael R. Brent

First Published May 1, 2006

LETTER

The fate of laterally transferred genes: Life in the fast lane to adaptation or death

Weilong Hao
G. Brian Golding

First Published May 1, 2006

ARTICLE

A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome

Mizuki Ohno
Tomofumi Miura
Masato Furuichi
Yohei Tominaga
Daisuke Tsuchimoto
Kunihiko Sakumi
Yusaku Nakabeppu

First Published May 1, 2006

LETTER

Escherichia coli global regulation" > Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation

Pooja Rawal
Veera Bhadra Rao Kummarasetti
Jinoy Ravindran
Nirmal Kumar
Kangkan Halder
Rakesh Sharma
Mitali Mukerji
Swapan Kumar Das
Shantanu Chowdhury

First Published May 1, 2006

PERSPECTIVE

Embracing the complexity of genomic data for personalized medicine

Mike West
Geoffrey S. Ginsburg
Andrew T. Huang
Joseph R. Nevins

First Published May 1, 2006

LETTER

Saccharomyces cerevisiae" > Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

Markus J. Herrgård
Baek-Seok Lee
Vasiliy Portnoy
Bernhard Ø. Palsson

First Published April 10, 2006

LETTER

Caenorhabditis elegans" > Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans

Nansheng Chen
Lincoln D. Stein

First Published April 10, 2006

RESOURCE

Escherichia coli K-12" > Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman
Maki Maeda
Aya Itoh
Kensaku Nishikata
Chiharu Takita
Rintaro Saito Takeshi Ara Kenji Nakahigashi Hsuan-Cheng Huang Aki Hirai Kohei Tsuzuki Seira Nakamura Mohammad Altaf-Ul-Amin Taku Oshima Tomoya Baba Natsuko Yamamoto Tomoyo Kawamura Tomoko Ioka-Nakamichi Masanari Kitagawa
... [+14 authors] ...,
Masaru Tomita
Shigehiko Kanaya
Chieko Wada
Hirotada Mori

First Published April 10, 2006

LETTER

Escherichia coli O157 by single nucleotide polymorphisms" > Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms

Wei Zhang
Weihong Qi
Thomas J. Albert
Alifiya S. Motiwala
David Alland
Eija K. Hyytia-Trees
... [+1 authors] ...,
Efrain M. Ribot
Patricia I. Fields
Thomas S. Whittam
Bala Swaminathan

First Published April 10, 2006

LETTER

Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice

Guangming He
Xiaojin Luo
Feng Tian
Kegui Li
Zuofeng Zhu
Wei Su Xiaoyin Qian
... [+2 authors] ...,
Yongcai Fu
Xiangkun Wang
Chuanqing Sun
Jinshui Yang

First Published April 10, 2006

RESOURCE

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Huntley Stuart
Baggott Daniel M.
Hamilton Aaron T.
Tran-Gyamfi Mary
Yang Shan
Kim Joomyeong
Gordon Laurie
Branscomb Elbert
Stubbs Lisa

First Published April 10, 2006

LETTER

Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes

Aaron T. Hamilton
Stuart Huntley
Mary Tran-Gyamfi
Daniel M. Baggott
Laurie Gordon
Lisa Stubbs

First Published April 10, 2006

Methods

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

Mathieu Blanchette
Alain R. Bataille
Xiaoyu Chen
Christian Poitras
Josée Laganière
Céline Lefèbvre Geneviève Deblois Vincent Giguère
... [+3 authors] ...,
Vincent Ferretti
Dominique Bergeron
Benoit Coulombe
François Robert

First Published April 10, 2006

LETTER

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

Mark Bieda
Xiaoqin Xu
Michael A. Singer
Roland Green
Peggy J. Farnham

First Published April 10, 2006

LETTER

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

Xinwei She
Ge Liu
Mario Ventura
Shaying Zhao
Doriana Misceo
Roberta Roberto Maria Francesca Cardone
... [+2 authors] ...,
Mariano Rocchi
Eric D. Green
Nicoletta Archidiacano
Evan E. Eichler

First Published April 10, 2006

Methods

Systematic identification of functional orthologs based on protein network comparison

Sourav Bandyopadhyay
Roded Sharan
Trey Ideker

First Published April 4, 2006

ERRATUM

Correction for Volume 16, p. 182

First Published April 3, 2006

RESOURCE

An isochore map of human chromosomes

Maria Costantini
Oliver Clay
Fabio Auletta
Giorgio Bernardi

First Published April 3, 2006

ERRATUM

Correction for Volume 13, p. 781

First Published April 3, 2006

LETTER

Alu-mediated 100-kb deletion in the primate genome: The loss of the agouti signaling protein gene in the lesser apes" > Alu-mediated 100-kb deletion in the primate genome: The loss of the agouti signaling protein gene in the lesser apes

Kazuhiro Nakayama
Takafumi Ishida

First Published April 3, 2006

ARTICLE

Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis

Gayle K. McEwen
Adam Woolfe
Debbie Goode
Tanya Vavouri
Heather Callaway
Greg Elgar

First Published March 13, 2006

LETTER

n in the X escape region" > Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]_n in the X escape region

John A. McNeil
Kelly P. Smith
Lisa L. Hall
Jeanne B. Lawrence

First Published March 13, 2006

ARTICLE

Drosophila retinal determination protein Eyeless" > Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless

Edwin J. Ostrin
Yumei Li
Kristi Hoffman
Jing Liu
Keqing Wang
Li Zhang
Graeme Mardon
Rui Chen

First Published March 13, 2006

LETTER

Genetic variation in the zebrafish

Victor Guryev
Marco J. Koudijs
Eugene Berezikov
Stephen L. Johnson
Ronald H.A. Plasterk
Fredericus J.M. van Eeden
Edwin Cuppen

First Published March 13, 2006

LETTER

Disentangling information flow in the Ras-cAMP signaling network

Gregory W. Carter
Steffen Rupp
Gerald R. Fink
Timothy Galitski

First Published March 13, 2006

LETTER

Evolution of exon–intron structure and alternative splicing in fruit flies and malarial mosquito genomes

Dmitry B. Malko
Vsevolod J. Makeev
Andrey A. Mironov
Mikhail S. Gelfand

First Published March 6, 2006

LETTER

Drosophila: No evidence for faster-X protein evolution" > X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution

Kevin Thornton
Doris Bachtrog
Peter Andolfatto

First Published March 6, 2006

RESOURCE

Plasmodium falciparum interactome reveals protein function on a genome-wide scale" > Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale

Shailesh V. Date
Christian J. Stoeckert

First Published March 6, 2006

LETTER

Arabidopsis microRNA families through duplication events" > Evolution of Arabidopsis microRNA families through duplication events

Christopher Maher
Lincoln Stein
Doreen Ware

First Published March 6, 2006

LETTER

S. cerevisiae" > Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae

James P. Kastenmayer
Li Ni
Angela Chu
Lauren E. Kitchen
Wei-Chun Au
Hui Yang Carole D. Carter David Wheeler
... [+3 authors] ...,
Ronald W. Davis
Jef D. Boeke
Michael A. Snyder
Munira A. Basrai

First Published March 1, 2006

COMMENTARY

Small open reading frames: Not so small anymore

Richelle Sopko
Brenda Andrews

First Published March 1, 2006

Forum

Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes?

Lutz Froenicke
Montserrat Garcia Caldés
Alexander Graphodatsky
Stefan Müller
Leslie A. Lyons
Terence J. Robinson
Marianne Volleth
Fengtang Yang
Johannes Wienberg

First Published March 1, 2006

Forum

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

Guillaume Bourque
Glenn Tesler
Pavel A. Pevzner

First Published March 1, 2006

In this Issue

Open Forum

Hillary E. Sussman

First Published March 1, 2006

Methods

Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays

Baochuan Lin
Zheng Wang
Gary J. Vora
Jennifer A. Thornton
Joel M. Schnur
Dzung C. Thach Kate M. Blaney Adam G. Ligler Anthony P. Malanoski Jose Santiago Elizabeth A. Walter Brian K. Agan David Metzgar Donald Seto Luke T. Daum Russell Kruzelock
... [+11 authors] ...,
Robb K. Rowley
Eric H. Hanson
Clark Tibbetts
David A. Stenger

First Published February 15, 2006

RESOURCE

GeneDesign: Rapid, automated design of multikilobase synthetic genes

Sarah M. Richardson
Sarah J. Wheelan
Robert M. Yarrington
Jef D. Boeke

First Published February 15, 2006

RESOURCE

A global assembly of cotton ESTs

Joshua A. Udall
Jordan M. Swanson
Karl Haller
Ryan A. Rapp
Michael E. Sparks
Jamie Hatfield Yeisoo Yu Yingru Wu Caitriona Dowd Aladdin B. Arpat Brad A. Sickler Thea A. Wilkins Jin Ying Guo Xiao Ya Chen Jodi Scheffler Earl Taliercio Ricky Turley Helen McFadden Paxton Payton Natalya Klueva Randell Allen Deshui Zhang Candace Haigler Curtis Wilkerson Jinfeng Suo Stefan R. Schulze Margaret L. Pierce Margaret Essenberg HyeRan Kim Danny J. Llewellyn Elizabeth S. Dennis David Kudrna
... [+27 authors] ...,
Rod Wing
Andrew H. Paterson
Cari Soderlund
Jonathan F. Wendel

First Published February 14, 2006

LETTER

The portability of tagSNPs across populations: A worldwide survey

Anna González-Neira
Xiayi Ke
Oscar Lao
Francesc Calafell
Arcadi Navarro
David Comas Howard Cann Suzannah Bumpstead Jilur Ghori Sarah Hunt
... [+5 authors] ...,
Panos Deloukas
Ian Dunham
Lon R. Cardon
Jaume Bertranpetit

First Published February 8, 2006

LETTER

Analysis of allelic differential expression in human white blood cells

P.V. Krishna Pant
Heng Tao
Erica J. Beilharz
Dennis G. Ballinger
David R. Cox
Kelly A. Frazer

First Published February 8, 2006

PERSPECTIVE

Application of sequence-based methods in human microbial ecology

Li Weng
Edward M. Rubin
James Bristow

First Published February 6, 2006

LETTER

Dynamic evolution at pericentromeres

Anne E. Hall
Gregory C. Kettler
Daphne Preuss

First Published February 6, 2006

Methods

Decoding the fine-scale structure of a breast cancer genome and transcriptome

Stanislav Volik
Benjamin J. Raphael
Guiqing Huang
Michael R. Stratton
Graham Bignel
John Murnane John H. Brebner Krystyna Bajsarowicz Pamela L. Paris Quanzhou Tao David Kowbel Anna Lapuk Dmitri A. Shagin Irina A. Shagina Joe W. Gray
... [+10 authors] ...,
Jan-Fang Cheng
Pieter J. de Jong
Pavel Pevzner
Colin Collins

First Published February 3, 2006

LETTER

“Genome design” model: Evidence from conserved intronic sequence in human–mouse comparison

Alexander E. Vinogradov

First Published February 3, 2006

RESOURCE

Utilization of a whole genome SNP panel for efficient genetic mapping in the mouse

Jennifer L. Moran
Andrew D. Bolton
Pamela V. Tran
Alison Brown
Noelle D. Dwyer
Danielle K. Manning Bryan C. Bjork Cheng Li Kate Montgomery Sandra M. Siepka Martha Hotz Vitaterna Joseph S. Takahashi
... [+7 authors] ...,
Tim Wiltshire
David J. Kwiatkowski
Raju Kucherlapati
David R. Beier

First Published February 3, 2006

ERRATUM

Correction for Volume 15, p. 1620

First Published February 1, 2006

Methods

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles

Li-Wei Chang
Rakesh Nagarajan
Jeffrey A. Magee
Jeffrey Milbrandt
Gary D. Stormo

First Published January 31, 2006

LETTER

Identification and analysis of evolutionarily cohesive functional modules in protein networks

Mónica Campillos
Christian von Mering
Lars Juhl Jensen
Peer Bork

First Published January 31, 2006

Methods

High-throughput DNA methylation profiling using universal bead arrays

Marina Bibikova
Zhenwu Lin
Lixin Zhou
Eugene Chudin
Eliza Wickham Garcia
Bonnie Wu Dennis Doucet Neal J. Thomas Yunhua Wang Ekkehard Vollmer Torsten Goldmann Carola Seifart Wei Jiang
... [+8 authors] ...,
David L. Barker
Mark S. Chee
Joanna Floros
Jian-Bing Fan

First Published January 31, 2006

Methods

Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine" > Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine

Yunhai Li
Kee Khoon Lee
Sean Walsh
Caroline Smith
Sophie Hadingham
Karim Sorefan
Gavin Cawley
Michael W. Bevan

First Published January 19, 2006

LETTER

cis: A potential role for chromatin structure" > Callipyge mutation affects gene expression in cis: A potential role for chromatin structure

Susan K. Murphy
Catherine M. Nolan
Zhiqing Huang
Katerina S. Kucera
Brad A. Freking
Timothy P.L. Smith
Kreg A. Leymaster
Jennifer R. Weidman
Randy L. Jirtle

First Published January 13, 2006

LETTER

Strong correlation between meiotic crossovers and haplotype structure in a 2.5-Mb region on the long arm of chromosome 21

Danielle M. Greenawalt
Xiangfeng Cui
Yujun Wu
Yong Lin
Hui-Yun Wang
Minjie Luo Irina V. Tereshchenko Guohong Hu James Y. Li Yi Chu Marco A. Azaro Christina J. DeCoste Nyam-Osor Chimge Richeng Gao
... [+9 authors] ...,
Li Shen
Weichung J. Shih
Kenneth Lange
Honghua Li

First Published December 29, 2005

Methods

Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay

Yu-Wei Cheng
Carrie Shawber
Dan Notterman
Philip Paty
Francis Barany

First Published December 20, 2005

LETTER

The prion protein gene in humans revisited: Lessons from a worldwide resequencing study

Marta Soldevila
Aida M. Andrés
Anna Ramírez-Soriano
Tomàs Marquès-Bonet
Francesc Calafell
Arcadi Navarro
Jaume Bertranpetit

First Published December 20, 2005

ARTICLE

Sodalis glossinidius in the tsetse host" > Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host

Hidehiro Toh
Brian L. Weiss
Sarah A.H. Perkin
Atsushi Yamashita
Kenshiro Oshima
Masahira Hattori
Serap Aksoy

First Published December 19, 2005

LETTER

Defining the mammalian CArGome

Qiang Sun
Guang Chen
Jeffrey W. Streb
Xiaochun Long
Yumei Yang
Christian J. Stoeckert
Joseph M. Miano

First Published December 19, 2005

LETTER

Evolution of alternative splicing after gene duplication

Zhixi Su
Jianmin Wang
Jun Yu
Xiaoqiu Huang
Xun Gu

First Published December 19, 2005

LETTER

A genome-wide study of dual coding regions in human alternatively spliced genes

Han Liang
Laura F. Landweber

First Published December 19, 2005

LETTER

Large-scale structure of genomic methylation patterns

Robert A. Rollins
Fatemeh Haghighi
John R. Edwards
Rajdeep Das
Michael Q. Zhang
Jingyue Ju
Timothy H. Bestor

First Published December 19, 2005

Methods

Design optimization methods for genomic DNA tiling arrays

Paul Bertone
Valery Trifonov
Joel S. Rozowsky
Falk Schubert
Olof Emanuelsson
John Karro
Ming-Yang Kao
Michael Snyder
Mark Gerstein

First Published December 19, 2005

LETTER

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Gary M. Wilson
Stephane Flibotte
Perseus I. Missirlis
Marco A. Marra
Steven Jones
Kevin Thornton
Andrew G. Clark
Robert A. Holt

First Published December 19, 2005

LETTER

L1 integration in a transgenic mouse model

Daria V. Babushok
Eric M. Ostertag
Christine E. Courtney
Janice M. Choi
Haig H. Kazazian

First Published December 19, 2005

LETTER

Transposon-free regions in mammalian genomes

Cas Simons
Michael Pheasant
Igor V. Makunin
John S. Mattick

First Published December 19, 2005

RESOURCE

Ciona intestinalis" > Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis

Eiichi Shoguchi
Takeshi Kawashima
Yutaka Satou
Makoto Hamaguchi
Tadasu Sin-I
Yuji Kohara
Nik Putnam
Daniel S. Rokhsar
Nori Satoh

First Published December 14, 2005

LETTER

Mutation hot spots in mammalian mitochondrial DNA

Nicolas Galtier
David Enard
Yoan Radondy
Eric Bazin
Khalid Belkhir

First Published December 14, 2005

Methods

Logistic regression protects against population structure in genetic association studies

Efrosini Setakis
Heide Stirnadel
David J. Balding

First Published December 14, 2005

LETTER

Functional genomics of membrane transporters in human populations

Thomas J. Urban
Ronnie Sebro
Evan H. Hurowitz
Maya K. Leabman
Ilaria Badagnani
Leah L. Lagpacan
Neil Risch
Kathleen M. Giacomini

First Published December 14, 2005

Methods

Identification of transposable elements using multiple alignments of related genomes

Anat Caspi
Lior Pachter

First Published December 14, 2005

LETTER

Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice

Jianxin Ma
Scott A. Jackson

First Published December 14, 2005

LETTER

SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation" > A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation

Bo Thomsen
Per Horn
Frank Panitz
Emøke Bendixen
Anette H. Petersen
Lars-Erik Holm
... [+1 authors] ...,
Vivi H. Nielsen
Jørgen S. Agerholm
Jens Arnbjerg
Christian Bendixen

First Published December 12, 2005

RESOURCE

Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza" > The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

Jetty S.S. Ammiraju
Meizhong Luo
José L. Goicoechea
Wenming Wang
Dave Kudrna
Christopher Mueller Jayson Talag HyeRan Kim Nicholas B. Sisneros Barbara Blackmon Eric Fang Jeffery B. Tomkins Darshan Brar David MacKill Susan McCouch Nori Kurata Georgina Lambert David W. Galbraith K. Arumuganathan Kiran Rao Jason G. Walling Navdeep Gill Yeisoo Yu
... [+18 authors] ...,
Phillip SanMiguel
Carol Soderlund
Scott Jackson
Rod A. Wing

First Published December 12, 2005

LETTER

The evolutionary dynamics of α-satellite

M. Katharine Rudd
Gregory A. Wray
Huntington F. Willard

First Published December 12, 2005

LETTER

Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22

Leonard Lipovich
Mary-Claire King

First Published December 12, 2005

LETTER

Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion

Nuno L. Barbosa-Morais
Maria Carmo-Fonseca
Samuel Aparício

First Published December 12, 2005

LETTER

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates

Hameed Khan
Arian Smit
Stéphane Boissinot

First Published December 12, 2005

LETTER

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura
Ai Wakamatsu
Yutaka Suzuki
Toshio Ota
Tetsuo Nishikawa
Riu Yamashita Jun-ichi Yamamoto Mitsuo Sekine Katsuki Tsuritani Hiroyuki Wakaguri Shizuko Ishii Tomoyasu Sugiyama Kaoru Saito Yuko Isono Ryotaro Irie Norihiro Kushida Takahiro Yoneyama Rie Otsuka Katsuhiro Kanda Takahide Yokoi Hiroshi Kondo Masako Wagatsuma Katsuji Murakawa Shinichi Ishida Tadashi Ishibashi Asako Takahashi-Fujii Tomoo Tanase Keiichi Nagai
... [+23 authors] ...,
Hisashi Kikuchi
Kenta Nakai
Takao Isogai
Sumio Sugano

First Published December 12, 2005

Methods

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

Gregory E. Crawford
Ingeborg E. Holt
James Whittle
Bryn D. Webb
Denise Tai
Sean Davis Elliott H. Margulies YiDong Chen John A. Bernat David Ginsburg Daixing Zhou Shujun Luo
... [+7 authors] ...,
Thomas J. Vasicek
Mark J. Daly
Tyra G. Wolfsberg
Francis S. Collins

First Published December 12, 2005

LETTER

Transcription-mediated gene fusion in the human genome

Pinchas Akiva
Amir Toporik
Sarit Edelheit
Yifat Peretz
Alex Diber
Ronen Shemesh
Amit Novik
Rotem Sorek

First Published December 12, 2005

ARTICLE

Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression" > Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression

Wei Deng
Xiaopeng Zhu
Geir Skogerbø
Yi Zhao
Zhuo Fu
Yudong Wang Housheng He Lun Cai Hong Sun Changning Liu Biao Li Baoyan Bai Jie Wang Dong Jia Shiwei Sun Hang He
... [+11 authors] ...,
Yan Cui
Yu Wang
Dongbo Bu
Runsheng Chen

First Published December 12, 2005

LETTER

Tandem chimerism as a means to increase protein complexity in the human genome

Genís Parra
Alexandre Reymond
Noura Dabbouseh
Emmanouil T. Dermitzakis
Robert Castelo
Timothy M. Thomson
Stylianos E. Antonarakis
Roderic Guigó

First Published December 12, 2005

ARTICLE

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

Timothy Ravasi
Harukazu Suzuki
Ken C. Pang
Shintaro Katayama
Masaaki Furuno
Rie Okunishi Shiro Fukuda Kelin Ru Martin C. Frith M. Milena Gongora
... [+5 authors] ...,
Sean M. Grimmond
David A. Hume
Yoshihide Hayashizaki
John S. Mattick

First Published December 12, 2005

ARTICLE

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

Sara J. Cooper
Nathan D. Trinklein
Elizabeth D. Anton
Loan Nguyen
Richard M. Myers

First Published December 12, 2005

Methods

Development of a microscopic platform for real-time monitoring of biomolecular interactions

Yasuhiro Sasuga
Tomomi Tani
Masahito Hayashi
Hisashi Yamakawa
Osamu Ohara
Yoshie Harada

First Published December 12, 2005

LETTER

Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”" > Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”

Jan Drouaud
Christine Camilleri
Pierre-Yves Bourguignon
Aurélie Canaguier
Aurélie Bérard
Daniel Vezon Sandra Giancola Dominique Brunel
... [+3 authors] ...,
Vincent Colot
Bernard Prum
Hadi Quesneville
Christine Mézard

First Published December 12, 2005

PERSPECTIVE

Emerging technologies in DNA sequencing

Michael L. Metzker

First Published December 8, 2005

PERSPECTIVE

Structure and function of the human genome

Peter F.R. Little

First Published December 8, 2005

PERSPECTIVE

Impact of genomics on research in the rat

Jozef Lazar
Carol Moreno
Howard J. Jacob
Anne E. Kwitek

First Published December 8, 2005

PERSPECTIVE

Genome annotation past, present, and future: How to define an ORF at each locus

Michael R. Brent

First Published December 8, 2005

Dog Special/Letters

Hotspots of mutation and breakage in dog and human chromosomes

Caleb Webber
Chris P. Ponting

First Published December 8, 2005

PERSPECTIVE

Xenomics

Enrique Amaya

First Published December 8, 2005

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