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Resource

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Aliza B. Rubenstein
Gregory R. Smith
Zidong Zhang
Xi Chen
Toby L. Chambers
Frederique Ruf-Zamojski Natalia Mendelev Wan Sze Cheng Michel Zamojski Mary Anne S. Amper Venugopalan D. Nair Andrew R. Marderstein Stephen B. Montgomery Olga G. Troyanskaya
... [+9 authors] ...,
Elena Zaslavsky
Todd Trappe
Scott Trappe
Stuart C. Sealfon

First Published May 20, 2025

Method

Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE

Yingxin Lin
Tung-Yu Wu
Xi Chen
Sheng Wan
Brian Chao
Jingxue Xin
Jean Y.H. Yang
Wing H. Wong
Y.X. Rachel Wang

First Published December 15, 2023

Method

Time course regulatory analysis based on paired expression and chromatin accessibility data

Zhana Duren
Xi Chen
Jingxue Xin
Yong Wang
Wing Hung Wong

First Published March 18, 2020

Resource

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

Yi Shao
Chunyan Chen
Hao Shen
Bin Z. He
Daqi Yu
Shuai Jiang Shilei Zhao Zhiqiang Gao Zhenglin Zhu Xi Chen Yan Fu
... [+6 authors] ...,
Hua Chen
Ge Gao
Manyuan Long
Yong E. Zhang

First Published March 12, 2019

LETTER

Evolution of the mammalian transcription factor binding repertoire via transposable elements

Guillaume Bourque
Bernard Leong
Vinsensius B. Vega
Xi Chen
Yen Ling Lee
Kandhadayar G. Srinivasan Joon-Lin Chew
... [+2 authors] ...,
Yijun Ruan
Chia-Lin Wei
Huck Hui Ng
Edison T. Liu

First Published August 5, 2008