Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Research
Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency
- First Published September 18, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Research
Dynamic landscape of tandem 3′ UTRs during zebrafish development
- First Published September 5, 2012
Resource
HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies
- First Published May 3, 2012
Method
Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing
- First Published April 7, 2011