Method
Enabling efficient and robust analysis of tandem repeats in genomic data using Wavefront-based String Decomposer
- First Published April 8, 2026
Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers
- First Published August 17, 2020
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Resource
HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies
- First Published May 3, 2012
