Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
- First Published June 13, 2018
Research
Integrated single-cell genetic and transcriptional analysis suggests novel drivers of chronic lymphocytic leukemia
- First Published July 5, 2017
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
Drosophila genome" > Nature and function of insulator protein binding sites in the Drosophila genome
- First Published July 5, 2012
