Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Research
Identification of FMR1-regulated molecular networks in human neurodevelopment
- First Published March 16, 2020
Research
Allele-specific control of replication timing and genome organization during development
- First Published May 7, 2018
Research
Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
- First Published February 2, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Resource
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- First Published March 9, 2015
Method
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
- First Published August 13, 2014
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013