Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Research
Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses
- First Published July 3, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Research
Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
- First Published June 10, 2014
Research
Reprogramming of the human intestinal epigenome by surgical tissue transposition
- First Published February 10, 2014
Method
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
- First Published December 3, 2013
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
