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Your search for returned 31 results

Method

Analyzing rare mutations in metagenomes assembled using long and accurate reads

Marcus W. Fedarko
Mikhail Kolmogorov
Pavel A. Pevzner

First Published November 23, 2022

Method

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

Andrey V. Bzikadze
Alla Mikheenko
Pavel A. Pevzner

First Published November 15, 2022

Method

Automated annotation of human centromeres with HORmon

Olga Kunyavskaya
Tatiana Dvorkina
Andrey V. Bzikadze
Ivan A. Alexandrov
Pavel A. Pevzner

First Published May 11, 2022

Method

Variations in antibody repertoires correlate with vaccine responses

Yana Safonova
Sung Bong Shin
Luke Kramer
James Reecy
Corey T. Watson
Timothy P.L. Smith
Pavel A. Pevzner

First Published March 31, 2022

Research

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

Yana Safonova
Pavel A. Pevzner

First Published September 18, 2020

Method

Plasmid detection and assembly in genomic and metagenomic data sets

Dmitry Antipov
Mikhail Raiko
Alla Lapidus
Pavel A. Pevzner

First Published May 2, 2019

Research

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

Marta Farré
Jaebum Kim
Anastasia A. Proskuryakova
Yang Zhang
Anastasia I. Kulemzina
Qiye Li Yang Zhou Yingqi Xiong Jennifer L. Johnson Polina L. Perelman Warren E. Johnson Wesley C. Warren Anna V. Kukekova Guojie Zhang Stephen J. O'Brien Oliver A. Ryder
... [+11 authors] ...,
Alexander S. Graphodatsky
Jian Ma
Harris A. Lewin
Denis M. Larkin

First Published February 13, 2019

Method

Detection and analysis of ancient segmental duplications in mammalian genomes

Lianrong Pu
Yu Lin
Pavel A. Pevzner

First Published May 7, 2018

Method

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk
Dmitry Meleshko
Anton Korobeynikov
Pavel A. Pevzner

First Published March 15, 2017

Research

Pangolin genomes and the evolution of mammalian scales and immunity

Siew Woh Choo
Mike Rayko
Tze King Tan
Ranjeev Hari
Aleksey Komissarov
Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
... [+23 authors] ...,
Mark B. Gerstein
Leonard Lipovich
Stephen J. O'Brien
Guat Jah Wong

First Published August 10, 2016

Method

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Jeffrey S. McLean
Mary-Jane Lombardo
Michael G. Ziegler
Mark Novotny
Joyclyn Yee-Greenbaum
Jonathan H. Badger Glenn Tesler Sergey Nurk Valery Lesin Daniel Brami Adam P. Hall Anna Edlund Lisa Z. Allen Scott Durkin Sharon Reed Francesca Torriani Kenneth H. Nealson
... [+12 authors] ...,
Pavel A. Pevzner
Robert Friedman
J. Craig Venter
Roger S. Lasken

First Published April 5, 2013

Method

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

Can Alkan
Maria Francesca Cardone
Claudia Rita Catacchio
Francesca Antonacci
Stephen J. O'Brien
Oliver A. Ryder Stefania Purgato
... [+2 authors] ...,
Monica Zoli
Giuliano Della Valle
Evan E. Eichler
Mario Ventura

First Published November 16, 2010

Commentary

Every genome sequence needs a good map

Harris A. Lewin
Denis M. Larkin
Joan Pontius
Stephen J. O'Brien

First Published July 13, 2009

Resource

Breakpoint graphs and ancestral genome reconstructions

Max A. Alekseyev
Pavel A. Pevzner

First Published February 13, 2009

Methods

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Nitin Gupta
Jamal Benhamida
Vipul Bhargava
Daniel Goodman
Elisabeth Kain
Ian Kerman Ngan Nguyen Noah Ollikainen Jesse Rodriguez Jian Wang Mary S. Lipton
... [+6 authors] ...,
Margaret Romine
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published April 21, 2008

Methods

Short read fragment assembly of bacterial genomes

Mark J. Chaisson
Pavel A. Pevzner

First Published December 14, 2007

Methods

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Nitin Gupta
Stephen Tanner
Navdeep Jaitly
Joshua N. Adkins
Mary Lipton
Robert Edwards Margaret Romine
... [+2 authors] ...,
Andrei Osterman
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published August 9, 2007

LETTER

LIX1 function for motor neuron survival" > An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival

John C. Fyfe
Marilyn Menotti-Raymond
Victor A. David
Lars Brichta
Alejandro A. Schäffer
Richa Agarwala William J. Murphy William J. Wedemeyer Brittany L. Gregory
... [+4 authors] ...,
Bethany G. Buzzell
Meghan C. Drummond
Brunhilde Wirth
Stephen J. O'Brien

First Published August 9, 2006

Forum

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

Guillaume Bourque
Glenn Tesler
Pavel A. Pevzner

First Published March 1, 2006

ARTICLE

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

Francisco M. De La Vega
Hadar Isaac
Andrew Collins
Charles R. Scafe
Bjarni V. Halldórsson
Xiaoping Su Ross A. Lippert Yu Wang Marion Laig-Webster Ryan T. Koehler Janet S. Ziegle Lewis T. Wogan Junko F. Stevens Kyle M. Leinen Sheri J. Olson Karl J. Guegler Xiaoqing You Lily H. Xu Heinz G. Hemken Francis Kalush Mitsuo Itakura Yi Zheng Guy de Thé Stephen J. O'Brien Andrew G. Clark
... [+20 authors] ...,
Sorin Istrail
Michael W. Hunkapiller
Eugene G. Spier
Dennis A. Gilbert

First Published March 21, 2005

Chicken Special/Letters

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

Guillaume Bourque
Evgeny M. Zdobnov
Peer Bork
Pavel A. Pevzner
Glenn Tesler

First Published December 8, 2004

LETTER

Alu repeat elements reveals complex evolutionary history" > Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

Alkes L. Price
Eleazar Eskin
Pavel A. Pevzner

First Published November 1, 2004

ARTICLE

Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes

Guillaume Bourque
Pavel A. Pevzner
Glenn Tesler

First Published April 1, 2004

LETTER

The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals

William J. Murphy
Lutz Frönicke
Stephen J. O'Brien
Roscoe Stanyon

First Published July 17, 2003

LETTER

Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region

Naoya Yuhki
Thomas Beck
Robert M. Stephens
Yoko Nishigaki
Kymberly Newmann
Stephen J. O'Brien

First Published May 12, 2003

LETTER

Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats

Carlos A. Driscoll
Marilyn Menotti-Raymond
George Nelson
David Goldstein
Stephen J. O'Brien

First Published March 1, 2002

LETTER

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species

Guillaume Bourque
Pavel A. Pevzner

First Published January 1, 2002

INSIGHT/OUTLOOK

Assembling Puzzles from Preassembled Blocks

Pavel A. Pevzner

First Published September 1, 2001

METHODS

Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry

Pavel A. Pevzner
Zufar Mulyukov
Vlado Dancik
Chris L Tang

First Published February 1, 2001

LETTER

A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping

William J. Murphy
Shan Sun
Zhang-qun Chen
Naoya Yuhki
Deborah Hirschmann
Marilyn Menotti-Raymond
Stephen J. O'Brien

First Published May 1, 2000

LETTER

Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping

William J. Murphy
Shan Sun
Zhang-Qun Chen
Jill Pecon-Slattery
Stephen J. O'Brien

First Published December 1, 1999