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Mini-Review

Evolution of genome-wide methylation profiling technologies

  • Carolina Montano
  • Winston Timp
  • First Published April 14, 2025
Perspective

Unraveling the hidden complexity of cancer through long-read sequencing

  • Qiuhui Li
  • Ayse G. Keskus
  • Justin Wagner
  • Michal B. Izydorczyk
  • Winston Timp
  • Fritz J. Sedlazeck
  • ... [+1 authors] ...,
  • Alison P. Klein
  • Justin M. Zook
  • Mikhail Kolmogorov
  • Michael C. Schatz
  • First Published March 20, 2025
Research

Gaps and complex structurally variant loci in phased genome assemblies

  • David Porubsky
  • Mitchell R. Vollger
  • William T. Harvey
  • Allison N. Rozanski
  • Peter Ebert
  • Glenn Hickey Patrick Hasenfeld Ashley D. Sanders Catherine Stober Jan O. Korbel Benedict Paten Tobias Marschall Evan E. Eichler Haley J. Abel Lucinda L. Antonacci-Fulton Mobin Asri Gunjan Baid Carl A. Baker Anastasiya Belyaeva Konstantinos Billis Guillaume Bourque Silvia Buonaiuto Andrew Carroll Mark J.P. Chaisson Pi-Chuan Chang Xian H. Chang Haoyu Cheng Justin Chu Sarah Cody Vincenza Colonna Daniel E. Cook Robert M. Cook-Deegan Omar E. Cornejo Mark Diekhans Daniel Doerr Peter Ebert Jana Ebler Evan E. Eichler Jordan M. Eizenga Susan Fairley Olivier Fedrigo Adam L. Felsenfeld Xiaowen Feng Christian Fischer Paul Flicek Giulio Formenti Adam Frankish Robert S. Fulton Yan Gao Shilpa Garg Erik Garrison Nanibaa’ A. Garrison Carlos Garcia Giron Richard E. Green Cristian Groza Andrea Guarracino Leanne Haggerty Ira M. Hall William T. Harvey Marina Haukness David Haussler Simon Heumos Glenn Hickey Kendra Hoekzema Thibaut Hourlier Kerstin Howe Miten Jain Erich D. Jarvis Hanlee P. Ji Eimear E. Kenny Barbara A. Koenig Alexey Kolesnikov Jan O. Korbel Jennifer Kordosky Sergey Koren HoJoon Lee Alexandra P. Lewis Heng Li Wen-Wei Liao Shuangjia Lu Tsung-Yu Lu Julian K. Lucas Hugo Magalhães Santiago Marco-Sola Pierre Marijon Charles Markello Tobias Marschall Fergal J. Martin Ann McCartney Jennifer McDaniel Karen H. Miga Matthew W. Mitchell Jean Monlong Jacquelyn Mountcastle Katherine M. Munson Moses Njagi Mwaniki Maria Nattestad Adam M. Novak Sergey Nurk Hugh E. Olsen Nathan D. Olson Benedict Paten Trevor Pesout Adam M. Phillippy Alice B. Popejoy David Porubsky Pjotr Prins Daniela Puiu Mikko Rautiainen Allison A. Regier Arang Rhie Samuel Sacco Ashley D. Sanders Valerie A. Schneider Baergen I. Schultz Kishwar Shafin Jonas A. Sibbesen Jouni Sirén Michael W. Smith Heidi J. Sofia Ahmad N. Abou Tayoun Françoise Thibaud-Nissen Chad Tomlinson Francesca Floriana Tricomi Flavia Villani Mitchell R. Vollger Justin Wagner Brian Walenz
  • ... [+123 authors] ...,
  • Ting Wang
  • Jonathan M.D. Wood
  • Aleksey V. Zimin
  • Justin M. Zook
  • First Published May 10, 2023
Research

Genomic insights into metabolic flux in hummingbirds

  • Ariel Gershman
  • Quinn Hauck
  • Morag Dick
  • Jerrica M. Jamison
  • Michael Tassia
  • Xabier Agirrezabala Saad Muhammad Raafay Ali Rachael E. Workman
  • ... [+4 authors] ...,
  • Mikel Valle
  • G. William Wong
  • Kenneth C. Welch
  • Winston Timp
  • First Published May 8, 2023
Research

Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera

  • Peter O. Mulhair
  • Liam Crowley
  • Douglas H. Boyes
  • Amber Harper
  • Owen T. Lewis
  • Peter W.H. Holland Mark Blaxter Nova Mieszkowska Federica Di Palma Peter Holland Richard Durbin Thomas Richards Matthew Berriman Paul Kersey Peter Hollingsworth Willie Wilson Alex Twyford Ester Gaya Mara Lawniczak Owen Lewis Gavin Broad
  • ... [+16 authors] ...,
  • Kevin Howe
  • Michelle Hart
  • Paul Flicek
  • Ian Barnes
  • First Published December 8, 2022
Research

Chromosome-specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing

  • Samantha L. Sholes
  • Kayarash Karimian
  • Ariel Gershman
  • Thomas J. Kelly
  • Winston Timp
  • Carol W. Greider
  • First Published October 26, 2021
Research

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

  • Sergey Aganezov
  • Sara Goodwin
  • Rachel M. Sherman
  • Fritz J. Sedlazeck
  • Gayatri Arun
  • Sonam Bhatia Isac Lee Melanie Kirsche Robert Wappel Melissa Kramer Karen Kostroff
  • ... [+6 authors] ...,
  • David L. Spector
  • Winston Timp
  • W. Richard McCombie
  • Michael C. Schatz
  • First Published September 4, 2020
Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

  • Raquel Ordoñez
  • Marta Kulis
  • Nuria Russiñol
  • Vicente Chapaprieta
  • Arantxa Carrasco-Leon
  • Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
  • ... [+30 authors] ...,
  • Hendrik G. Stunnenberg
  • Xabier Agirre
  • Felipe Prosper
  • Jose I. Martin-Subero
  • First Published August 20, 2020
Resource

C. elegans using direct RNA sequencing" > The full-length transcriptome of C. elegans using direct RNA sequencing

  • Nathan P. Roach
  • Norah Sadowski
  • Amelia F. Alessi
  • Winston Timp
  • James Taylor
  • John K. Kim
  • First Published February 5, 2020
Resource

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

  • Mats E. Pettersson
  • Christina M. Rochus
  • Fan Han
  • Junfeng Chen
  • Jason Hill
  • Ola Wallerman Guangyi Fan Xiaoning Hong Qiwu Xu He Zhang Shanshan Liu Xin Liu Leanne Haggerty Toby Hunt Fergal J. Martin
  • ... [+10 authors] ...,
  • Paul Flicek
  • Ignas Bunikis
  • Arild Folkvord
  • Leif Andersson
  • First Published October 24, 2019
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