Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Combining DNA and protein alignments to improve genome annotation with LiftOn
- First Published December 27, 2024
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments
- First Published December 23, 2020
Research
Human contamination in bacterial genomes has created thousands of spurious proteins
- First Published May 7, 2019
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Resource
Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms
- First Published August 19, 2015
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
