Method
Analyzing rare mutations in metagenomes assembled using long and accurate reads
- First Published November 23, 2022
Method
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
- First Published November 15, 2022
Method
Variations in antibody repertoires correlate with vaccine responses
- First Published March 31, 2022
Research
The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence
- First Published June 17, 2021
Research
V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
- First Published September 18, 2020
Method
Plasmid detection and assembly in genomic and metagenomic data sets
- First Published May 2, 2019
Research
Global transcriptional activity dynamics reveal functional enhancer RNAs
- First Published October 23, 2018
Method
Detection and analysis of ancient segmental duplications in mammalian genomes
- First Published May 7, 2018
Method
FIND: difFerential chromatin INteractions Detection using a spatial Poisson process
- First Published February 12, 2018
Research
Genome-wide map of regulatory interactions in the human genome
- First Published September 16, 2014
Method
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
- First Published April 5, 2013
Methods
High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
- First Published July 6, 2009
Methods
High-resolution human core-promoter prediction with CoreBoost_HM
- First Published November 7, 2008
Methods
Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
- First Published April 21, 2008
LETTER
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
- First Published November 27, 2007
Methods
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
- First Published August 9, 2007
Forum
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
- First Published March 1, 2006
Chicken Special/Letters
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
- First Published December 8, 2004
LETTER
The mouse genome: Experimental examination of gene predictions and transcriptional start sites
- First Published December 1, 2004
LETTER
Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
- First Published November 1, 2004
ARTICLE
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
- First Published April 1, 2004
LETTER
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
- First Published January 1, 2002
LETTER
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
- First Published March 1, 2001
METHODS
Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry
- First Published February 1, 2001
PERSPECTIVE
Large-Scale Gene Expression Data Analysis: A New Challenge to Computational Biologists
- First Published August 1, 1999
