Research
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
- First Published April 10, 2025
Method
Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease
- First Published March 20, 2025
Perspective
Unraveling the hidden complexity of cancer through long-read sequencing
- First Published March 20, 2025
Review
k-mer approaches for biodiversity genomics" > k-mer approaches for biodiversity genomics
- First Published January 31, 2025
Method
MCHelper automatically curates transposable element libraries across eukaryotic species
- First Published December 9, 2024
Method
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
- First Published November 6, 2024
Resource
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
- First Published October 2, 2024
Research
Differences in activity and stability drive transposable element variation in tropical and temperate maize
- First Published September 9, 2024
Resource
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
- First Published July 1, 2024
Method
Ultrafast genome-wide inference of pairwise coalescence times
- First Published August 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Research
The genomic basis of evolutionary differentiation among honey bees
- First Published May 4, 2021
Method
Optimized sample selection for cost-efficient long-read population sequencing
- First Published April 2, 2021
Research
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
- First Published September 4, 2020
Research
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
- First Published June 28, 2018
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Method
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
- First Published December 16, 2016
Research
The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation
- First Published November 7, 2016
Method
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
- First Published October 7, 2015
Resource
Efficient de novo assembly of large genomes using compressed data structures
- First Published December 7, 2011
Resource
GAGE: A critical evaluation of genome assemblies and assembly algorithms
- First Published December 6, 2011
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Method
Revealing the genetic structure of a trait by sequencing a population under selection
- First Published March 21, 2011
Resource
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- First Published October 27, 2010
Perspective
Assembly of large genomes using second-generation sequencing
- First Published May 27, 2010
Resource
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- First Published June 4, 2009
RESOURCE
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- First Published November 24, 2008
RESOURCE
Mapping short DNA sequencing reads and calling variants using mapping quality scores
- First Published August 19, 2008
METHODS
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
- First Published September 1, 2002
LETTER
Alfresco—A Workbench for Comparative Genomic Sequence Analysis
- First Published August 1, 2000
METHODS
GeneWise in the Drosophila Annotation Experiment" > Using GeneWise in the Drosophila Annotation Experiment
- First Published April 1, 2000
LETTER
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
- First Published September 1, 1999
