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Research

Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera

  • Peter O. Mulhair
  • Liam Crowley
  • Douglas H. Boyes
  • Amber Harper
  • Owen T. Lewis
  • Peter W.H. Holland Mark Blaxter Nova Mieszkowska Federica Di Palma Peter Holland Richard Durbin Thomas Richards Matthew Berriman Paul Kersey Peter Hollingsworth Willie Wilson Alex Twyford Ester Gaya Mara Lawniczak Owen Lewis Gavin Broad
  • ... [+16 authors] ...,
  • Kevin Howe
  • Michelle Hart
  • Paul Flicek
  • Ian Barnes
  • First Published December 8, 2022
Resource

Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions

  • Rodrigo P. Baptista
  • Yiran Li
  • Adam Sateriale
  • Mandy J. Sanders
  • Karen L. Brooks
  • Alan Tracey Brendan R.E. Ansell Aaron R. Jex Garrett W. Cooper Ethan D. Smith Rui Xiao Jennifer E. Dumaine Peter Georgeson Bernard J. Pope
  • ... [+9 authors] ...,
  • Matthew Berriman
  • Boris Striepen
  • James A. Cotton
  • Jessica C. Kissinger
  • First Published November 11, 2021
Corrigendum

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published September 14, 2020
Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published July 27, 2020
Method

Variant antigen repertoires in Trypanosoma congolense populations and experimental infections can be profiled from deep sequence data using universal protein motifs

  • Sara Silva Pereira
  • Aitor Casas-Sánchez
  • Lee R. Haines
  • Moses Ogugo
  • Kihara Absolomon
  • Mandy Sanders Steve Kemp
  • ... [+2 authors] ...,
  • Álvaro Acosta-Serrano
  • Harry Noyes
  • Matthew Berriman
  • Andrew P. Jackson
  • First Published July 13, 2018
Research

Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

  • Ulrike Böhme
  • Thomas D. Otto
  • James A. Cotton
  • Sascha Steinbiss
  • Mandy Sanders
  • Samuel O. Oyola Antoine Nicot Sylvain Gandon Kailash P. Patra Colin Herd Ellen Bushell Katarzyna K. Modrzynska Oliver Billker
  • ... [+8 authors] ...,
  • Joseph M. Vinetz
  • Ana Rivero
  • Chris I. Newbold
  • Matthew Berriman
  • First Published March 2, 2018
Research

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

  • James Hadfield
  • Simon R. Harris
  • Helena M.B. Seth-Smith
  • Surendra Parmar
  • Patiyan Andersson
  • Philip M. Giffard Julius Schachter Jeanne Moncada Louise Ellison María Lucía Gallo Vaulet Marcelo Rodríguez Fermepin Frans Radebe Suyapa Mendoza Sander Ouburg Servaas A. Morré Konrad Sachse Mirja Puolakkainen Suvi J. Korhonen Chris Sonnex Rebecca Wiggins Hamid Jalal Tamara Brunelli Patrizia Casprini Rachel Pitt Cathy Ison Alevtina Savicheva Elena Shipitsyna Ronza Hadad Laszlo Kari Matthew J. Burton David Mabey Anthony W. Solomon David Lewis Peter Marsh
  • ... [+29 authors] ...,
  • Magnus Unemo
  • Ian N. Clarke
  • Julian Parkhill
  • Nicholas R. Thomson
  • First Published June 6, 2017
Research

Genomic analysis of the causative agents of coccidiosis in domestic chickens

  • Adam J. Reid
  • Damer P. Blake
  • Hifzur R. Ansari
  • Karen Billington
  • Hilary P. Browne
  • Josephine Bryant Matt Dunn Stacy S. Hung Fumiya Kawahara Diego Miranda-Saavedra Tareq B. Malas Tobias Mourier Hardeep Naghra Mridul Nair Thomas D. Otto Neil D. Rawlings Pierre Rivailler Alejandro Sanchez-Flores Mandy Sanders Chandra Subramaniam Yea-Ling Tay Yong Woo Xikun Wu Bart Barrell Paul H. Dear Christian Doerig Arthur Gruber Alasdair C. Ivens John Parkinson Marie-Adèle Rajandream Martin W. Shirley
  • ... [+26 authors] ...,
  • Kiew-Lian Wan
  • Matthew Berriman
  • Fiona M. Tomley
  • Arnab Pain
  • First Published July 11, 2014
Research

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

  • Matthew B. Rogers
  • James D. Hilley
  • Nicholas J. Dickens
  • Jon Wilkes
  • Paul A. Bates
  • Daniel P. Depledge David Harris Yerim Her Pawel Herzyk Hideo Imamura Thomas D. Otto Mandy Sanders Kathy Seeger Jean-Claude Dujardin
  • ... [+9 authors] ...,
  • Matthew Berriman
  • Deborah F. Smith
  • Christiane Hertz-Fowler
  • Jeremy C. Mottram
  • First Published October 28, 2011
Research

Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance

  • Tim Downing
  • Hideo Imamura
  • Saskia Decuypere
  • Taane G. Clark
  • Graham H. Coombs
  • James A. Cotton James D. Hilley Simonne de Doncker Ilse Maes Jeremy C. Mottram Mike A. Quail Suman Rijal Mandy Sanders Gabriele Schönian Olivia Stark Shyam Sundar
  • ... [+11 authors] ...,
  • Manu Vanaerschot
  • Christiane Hertz-Fowler
  • Jean-Claude Dujardin
  • Matthew Berriman
  • First Published October 28, 2011
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