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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

Multi-omics analyses demonstrate a critical role for EHMT1 methyltransferase in transcriptional repression during oogenesis

  • Hannah Demond
  • Courtney W. Hanna
  • Juan Castillo-Fernandez
  • Fátima Santos
  • Evangelia K. Papachristou
  • Anne Segonds-Pichon
  • ... [+1 authors] ...,
  • Kamal Kishore
  • Simon Andrews
  • Clive S. D'Santos
  • Gavin Kelsey
  • First Published January 23, 2023
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

Pervasive polymorphic imprinted methylation in the human placenta

  • Courtney W. Hanna
  • Maria S. Peñaherrera
  • Heba Saadeh
  • Simon Andrews
  • Deborah E. McFadden
  • Gavin Kelsey
  • Wendy P. Robinson
  • First Published January 14, 2016
Resource

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

  • Stefan Schoenfelder
  • Mayra Furlan-Magaril
  • Borbala Mifsud
  • Filipe Tavares-Cadete
  • Robert Sugar
  • Biola-Maria Javierre Takashi Nagano Yulia Katsman Moorthy Sakthidevi Steven W. Wingett Emilia Dimitrova Andrew Dimond Lucas B. Edelman Sarah Elderkin Kristina Tabbada Elodie Darbo Simon Andrews Bram Herman Andy Higgs Emily LeProust
  • ... [+15 authors] ...,
  • Cameron S. Osborne
  • Jennifer A. Mitchell
  • Nicholas M. Luscombe
  • Peter Fraser
  • First Published March 9, 2015
Method

Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C

  • Nicola H. Dryden
  • Laura R. Broome
  • Frank Dudbridge
  • Nichola Johnson
  • Nick Orr
  • Stefan Schoenfelder Takashi Nagano Simon Andrews Steven Wingett Iwanka Kozarewa Ioannis Assiotis Kerry Fenwick Sarah L. Maguire James Campbell Rachael Natrajan Maryou Lambros
  • ... [+11 authors] ...,
  • Eleni Perrakis
  • Alan Ashworth
  • Peter Fraser
  • Olivia Fletcher
  • First Published August 13, 2014
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • Stephen B. Montgomery
  • David L. Goode
  • Erika Kvikstad
  • Cornelis A. Albers
  • Zhengdong D. Zhang
  • Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
  • ... [+12 authors] ...,
  • Kateryna D. Makova
  • Jonathan Marchini
  • Gil McVean
  • Gerton Lunter
  • First Published March 11, 2013
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