A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq
- First Published July 11, 2025
The role of DNA methylation in directing the functional organization of the cancer epigenome
- First Published March 6, 2015
Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
- First Published September 11, 2013
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- First Published February 7, 2011
C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
- First Published December 22, 2010
MSB: A mean-shift-based approach for the analysis of structural variation in the genome
- First Published November 26, 2008
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
- First Published October 3, 2008
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
- First Published March 17, 2008
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
- First Published June 13, 2007
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
- First Published October 19, 2006
Suz12 binds to silenced regions of the genome in a cell-type-specific manner
- First Published June 2, 2006
Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome
- First Published April 10, 2006
Assessing the limits of genomic data integration for predicting protein networks
- First Published July 5, 2005
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
- First Published May 2, 2005
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
- First Published December 1, 2003
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
- First Published April 1, 2003
Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons
- First Published November 1, 2002
Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
- First Published October 1, 2002
Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
- First Published February 1, 2002
Relating Whole-Genome Expression Data with Protein-Protein Interactions
- First Published January 1, 2002
Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins
- First Published October 1, 2001
Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function
- First Published September 1, 2001