Search | Genome Research

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Ulrich Omasits
Adithi R. Varadarajan
Michael Schmid
Sandra Goetze
Damianos Melidis
Marc Bourqui Olga Nikolayeva Maxime Québatte Andrea Patrignani Christoph Dehio
... [+5 authors] ...,
Juerg E. Frey
Mark D. Robinson
Bernd Wollscheid
Christian H. Ahrens

First Published November 15, 2017

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

Tugce Bilgin Sonay
Tiago Carvalho
Mark D. Robinson
Maja P. Greminger
Michael Krützen
David Comas Gareth Highnam
... [+2 authors] ...,
David Mittelman
Andrew Sharp
Tomàs Marques-Bonet
Andreas Wagner

First Published August 19, 2015

lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines" > A lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines

David B. West
Ravi K. Pasumarthi
Brian Baridon
Esi Djan
Amanda Trainor
Stephen M. Griffey Eric K. Engelhard
... [+2 authors] ...,
Jared Rapp
Bowen Li
Pieter J. de Jong
K.C. Kent Lloyd

First Published January 15, 2015

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

Ulrich Omasits
Maxime Quebatte
Daniel J. Stekhoven
Claudia Fortes
Bernd Roschitzki
Mark D. Robinson
Christoph Dehio
Christian H. Ahrens

First Published July 22, 2013

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

Oronzo Capozzi
Lucia Carbone
Roscoe R. Stanyon
Annamaria Marra
Fengtang Yang
Christopher W. Whelan
Pieter J. de Jong
Mariano Rocchi
Nicoletta Archidiacono

First Published August 14, 2012

Copy-number-aware differential analysis of quantitative DNA sequencing data

Mark D. Robinson
Dario Strbenac
Clare Stirzaker
Aaron L. Statham
Jenny Song
Terence P. Speed
Susan J. Clark

First Published August 9, 2012

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

Aaron L. Statham
Mark D. Robinson
Jenny Z. Song
Marcel W. Coolen
Clare Stirzaker
Susan J. Clark

First Published March 30, 2012

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer

Fátima Valdés-Mora
Jenny Z. Song
Aaron L. Statham
Dario Strbenac
Mark D. Robinson
Shalima S. Nair
... [+1 authors] ...,
Kate I. Patterson
David J. Tremethick
Clare Stirzaker
Susan J. Clark

First Published July 25, 2011

Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X" > Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X

Di Kim Nguyen
Fan Yang
Rajinder Kaul
Can Alkan
Anthony Antonellis
Karen F. Friery
Baoli Zhu
Pieter J. de Jong
Christine M. Disteche

First Published January 31, 2011

Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation

Mark D. Robinson
Clare Stirzaker
Aaron L. Statham
Marcel W. Coolen
Jenny Z. Song
Shalima S. Nair
Dario Strbenac
Terence P. Speed
Susan J. Clark

First Published November 2, 2010

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

M. Katharine Rudd
RaeLynn M. Endicott
Cynthia Friedman
Megan Walker
Janet M. Young
Kazutoyo Osoegawa
Pieter J. de Jong
Eric D. Green
Barbara J. Trask

First Published October 24, 2008

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

Linda Z. Holland
Ricard Albalat
Kaoru Azumi
Èlia Benito-Gutiérrez
Matthew J. Blow
Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
... [+55 authors] ...,
Nicholas H. Putnam
Daniel S. Rokhsar
Noriyuki Satoh
Peter W.H. Holland

First Published June 18, 2008

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Robert Lyle
Paola Prandini
Kazutoyo Osoegawa
Boudewijn ten Hallers
Sean Humphray
Baoli Zhu Eduardo Eyras Robert Castelo Christine P. Bird Sarantos Gagos Carol Scott Antony Cox Samuel Deutsch Catherine Ucla Marc Cruts Sophie Dahoun Xinwei She Frederique Bena Sheng-Yue Wang Christine Van Broeckhoven Evan E. Eichler Roderic Guigo
... [+17 authors] ...,
Jane Rogers
Pieter J. de Jong
Alexandre Reymond
Stylianos E. Antonarakis

First Published September 25, 2007

Decoding the fine-scale structure of a breast cancer genome and transcriptome

Stanislav Volik
Benjamin J. Raphael
Guiqing Huang
Michael R. Stratton
Graham Bignel
John Murnane John H. Brebner Krystyna Bajsarowicz Pamela L. Paris Quanzhou Tao David Kowbel Anna Lapuk Dmitri A. Shagin Irina A. Shagina Joe W. Gray
... [+10 authors] ...,
Jan-Fang Cheng
Pieter J. de Jong
Pavel Pevzner
Colin Collins

First Published February 3, 2006

Independent intrachromosomal recombination events underlie the pericentric inversions of chimpanzee and gorilla chromosomes homologous to human chromosome 16

Violaine Goidts
Justyna M. Szamalek
Pieter J. de Jong
David N. Cooper
Nadia Chuzhanova
Horst Hameister
Hildegard Kehrer-Sawatzki

First Published September 1, 2005

Pooled genomic indexing of rhesus macaque

Aleksandar Milosavljevic
Ronald A. Harris
Erica J. Sodergren
Andrew R. Jackson
Ken J. Kalafus
Anne Hodgson Andrew Cree Weilie Dai Miklos Csuros
... [+4 authors] ...,
Baoli Zhu
Pieter J. de Jong
George M. Weinstock
Richard A. Gibbs

First Published February 1, 2005

Recurrent Sites for New Centromere Seeding

Mario Ventura
Stefania Weigl
Lucia Carbone
Maria Francesca Cardone
Doriana Misceo
Mariagrazia Teti Pietro D'Addabbo Annelise Wandall Erik Björck Pieter J. de Jong
... [+5 authors] ...,
Xinwei She
Evan E. Eichler
Nicoletta Archidiacono
Mariano Rocchi

First Published September 1, 2004

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

C. Andrew Stewart
Roger Horton
Richard J.N. Allcock
Jennifer L. Ashurst
Alexey M. Atrazhev
Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
... [+17 authors] ...,
Stephen Sawcer
John A. Todd
John Trowsdale
Stephan Beck

First Published May 12, 2004

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

Martin Krzywinski
John Wallis
Claudia Gösele
Ian Bosdet
Readman Chiu
Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
... [+47 authors] ...,
Norbert Hübner
Steven Jones
Marco Marra
Jacqueline Schein

First Published April 1, 2004

BAC Resources for the Rat Genome Project

Kazutoyo Osoegawa
Baoli Zhu
Chung Li Shu
Teresa Ren
Qing Cao
Gery M. Vessere
... [+1 authors] ...,
Michelle M. Lutz
Michael I. Jensen-Seaman
Shaying Zhao
Pieter J. de Jong

First Published April 1, 2004

SIM2 Interval are Frequently Functional" > Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional

Kelly A. Frazer
Heng Tao
Kazutoyo Osoegawa
Pieter J. de Jong
Xiyin Chen
Mark F. Doherty
David R. Cox

First Published February 12, 2004

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

Denis M. Larkin
Annelie Everts-van der Wind
Mark Rebeiz
Peter A. Schweitzer
Sharon Bachman
Cheryl Green Chris L. Wright Edhilvia J. Campos Leslie D. Benson Jennifer Edwards Lei Liu
... [+6 authors] ...,
Kazutoyo Osoegawa
James E. Womack
Pieter J. de Jong
Harris A. Lewin

First Published August 5, 2003

A Bacterial Artificial Chromosome Library for Sequencing the Complete Human Genome

Kazutoyo Osoegawa
Aaron G. Mammoser
Chenyan Wu
Eirik Frengen
Changjiang Zeng
Joseph J. Catanese
Pieter J. de Jong

First Published March 1, 2001

Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis

Kazutoyo Osoegawa
Minako Tateno
Peng Yeong Woon
Eirik Frengen
Aaron G. Mammoser
Joseph J. Catanese
Yoshihide Hayashizaki
Pieter J. de Jong

First Published January 1, 2000

Contig Maps and Genomic Sequencing Identify Candidate Genes in the Usher 1C Locus

Michael J. Higgins
Colleen D. Day
Nancy J. Smilinich
L. Ni
Paul R. Cooper
Norma J. Nowak Chris Davies Pieter J. de Jong
... [+3 authors] ...,
Fielding Hejtmancik
Glen A. Evans
Richard J.H. Smith
Thomas B. Shows

First Published January 1, 1998

High-Resolution Mapping and Transcript Identification at the Progressive Epilepsy with Mental Retardation Locus on Chromosome 8p

Susanna Ranta
Anna-Elina Lehesjoki
Maria de Fatima Bonaldo
James A. Knowles
Aune Hirvasniemi
Barbara Ross
... [+1 authors] ...,
Pieter J. de Jong
Marcelo Bento Soares
Albert de la Chapelle
T. Conrad Gilliam

First Published September 1, 1997

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Your search for returned 26 results

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines" > A lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

Copy-number-aware differential analysis of quantitative DNA sequencing data

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer

Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X" > Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X

Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Decoding the fine-scale structure of a breast cancer genome and transcriptome

Independent intrachromosomal recombination events underlie the pericentric inversions of chimpanzee and gorilla chromosomes homologous to human chromosome 16

Pooled genomic indexing of rhesus macaque

Recurrent Sites for New Centromere Seeding

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

BAC Resources for the Rat Genome Project

SIM2 Interval are Frequently Functional" > Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

A Bacterial Artificial Chromosome Library for Sequencing the Complete Human Genome

Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis

Contig Maps and Genomic Sequencing Identify Candidate Genes in the Usher 1C Locus

High-Resolution Mapping and Transcript Identification at the Progressive Epilepsy with Mental Retardation Locus on Chromosome 8p

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Your search for returned 26 results