Method
Combining DNA and protein alignments to improve genome annotation with LiftOn
- First Published December 27, 2024
Method
Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments
- First Published December 23, 2020
Research
Human contamination in bacterial genomes has created thousands of spurious proteins
- First Published May 7, 2019
Method
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics
- First Published November 15, 2017
Research
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
- First Published August 19, 2015
Resource
Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms
- First Published August 19, 2015
Method
Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
- First Published July 22, 2013
Method
Copy-number-aware differential analysis of quantitative DNA sequencing data
- First Published August 9, 2012
Method
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
- First Published March 30, 2012
Research
Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer
- First Published July 25, 2011