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Method

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

  • Ulrich Omasits
  • Adithi R. Varadarajan
  • Michael Schmid
  • Sandra Goetze
  • Damianos Melidis
  • Marc Bourqui Olga Nikolayeva Maxime Québatte Andrea Patrignani Christoph Dehio
  • ... [+5 authors] ...,
  • Juerg E. Frey
  • Mark D. Robinson
  • Bernd Wollscheid
  • Christian H. Ahrens
  • First Published November 15, 2017
Method

Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations

  • Jonathan S. Brammeld
  • Mia Petljak
  • Inigo Martincorena
  • Steven P. Williams
  • Luz Garcia Alonso
  • Alba Dalmases Beatriz Bellosillo Carla Daniela Robles-Espinoza Stacey Price Syd Barthorpe Patrick Tarpey Constantine Alifrangis Graham Bignell Joana Vidal Jamie Young Lucy Stebbings Kathryn Beal Michael R. Stratton Julio Saez-Rodriguez
  • ... [+14 authors] ...,
  • Mathew Garnett
  • Clara Montagut
  • Francesco Iorio
  • Ultan McDermott
  • First Published February 8, 2017
Corrigendum

Corrigendum: Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  • Young Seok Ju
  • Jose M.C. Tubio
  • William Mifsud
  • Beiyuan Fu
  • Helen R. Davies
  • Manasa Ramakrishna Yilong Li Lucy Yates Gunes Gundem Patrick S. Tarpey Sam Behjati Elli Papaemmanuil Sancha Martin Anthony Fullam Moritz Gerstung Jyoti Nangalia Anthony R. Green Carlos Caldas Åke Borg Andrew Tutt Ming Ta Michael Lee Laura J. van't Veer Benita K.T. Tan Samuel Aparicio Paul N. Span John W.M. Martens Stian Knappskog Anne Vincent-Salomon Anne-Lise Børresen-Dale Jórunn Erla Eyfjörd Ola Myklebost Adrienne M. Flanagan Christopher Foster David E. Neal Colin Cooper Rosalind Eeles G. Steven Bova Sunil R. Lakhani Christine Desmedt Gilles Thomas Andrea L. Richardson Colin A. Purdie Alastair M. Thompson Ultan McDermott
  • ... [+39 authors] ...,
  • Fengtang Yang
  • Serena Nik-Zainal
  • Peter J. Campbell
  • Michael R. Stratton
  • First Published May 2, 2016
Research

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

  • Tugce Bilgin Sonay
  • Tiago Carvalho
  • Mark D. Robinson
  • Maja P. Greminger
  • Michael Krützen
  • David Comas Gareth Highnam
  • ... [+2 authors] ...,
  • David Mittelman
  • Andrew Sharp
  • Tomàs Marques-Bonet
  • Andreas Wagner
  • First Published August 19, 2015
Research

Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  • Young Seok Ju
  • Jose M.C. Tubio
  • William Mifsud
  • Beiyuan Fu
  • Helen R. Davies
  • Manasa Ramakrishna Yilong Li Lucy Yates Gunes Gundem Patrick S. Tarpey Sam Behjati Elli Papaemmanuil Sancha Martin Anthony Fullam Moritz Gerstung Jyoti Nangalia Anthony R. Green Carlos Caldas Åke Borg Andrew Tutt Ming Ta Michael Lee Laura J. van't Veer Benita K.T. Tan Samuel Aparicio Paul N. Span John W.M. Martens Stian Knappskog Anne Vincent-Salomon Anne-Lise Børresen-Dale Jórunn Erla Eyfjörd Ola Myklebost Adrienne M. Flanagan Christopher Foster David E. Neal Colin Cooper Rosalind Eeles G. Steven Bova Sunil R. Lakhani Christine Desmedt Gilles Thomas Andrea L. Richardson Colin A. Purdie Alastair M. Thompson Ultan McDermott
  • ... [+39 authors] ...,
  • Fengtang Yang
  • Serena Nik-Zainal
  • Peter J. Campbell
  • Michael R. Stratton
  • First Published May 11, 2015
Research

C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency" > C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency

  • Bettina Meier
  • Susanna L. Cooke
  • Joerg Weiss
  • Aymeric P. Bailly
  • Ludmil B. Alexandrov
  • John Marshall Keiran Raine Mark Maddison
  • ... [+3 authors] ...,
  • Elizabeth Anderson
  • Michael R. Stratton
  • Anton Gartner
  • Peter J. Campbell
  • First Published July 16, 2014
Method

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

  • Ulrich Omasits
  • Maxime Quebatte
  • Daniel J. Stekhoven
  • Claudia Fortes
  • Bernd Roschitzki
  • Mark D. Robinson
  • Christoph Dehio
  • Christian H. Ahrens
  • First Published July 22, 2013
Method

Copy-number-aware differential analysis of quantitative DNA sequencing data

  • Mark D. Robinson
  • Dario Strbenac
  • Clare Stirzaker
  • Aaron L. Statham
  • Jenny Song
  • Terence P. Speed
  • Susan J. Clark
  • First Published August 9, 2012
Method

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

  • Aaron L. Statham
  • Mark D. Robinson
  • Jenny Z. Song
  • Marcel W. Coolen
  • Clare Stirzaker
  • Susan J. Clark
  • First Published March 30, 2012
Method

Estimation of rearrangement phylogeny for cancer genomes

  • Chris D. Greenman
  • Erin D. Pleasance
  • Scott Newman
  • Fengtang Yang
  • Beiyuan Fu
  • Serena Nik-Zainal David Jones King Wai Lau Nigel Carter
  • ... [+4 authors] ...,
  • Paul A.W. Edwards
  • P. Andrew Futreal
  • Michael R. Stratton
  • Peter J. Campbell
  • First Published October 12, 2011
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