Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
- First Published June 12, 2024
Method
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
- First Published June 12, 2024
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes
- First Published May 17, 2018
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Methods
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
- First Published August 29, 2008