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Single-cell template strand sequencing reveals culture-induced chromosomal instability in a gibbon cell line

  • First Published May 4, 2026

Epigenetic characterization of pseudogenes across human tissues

  • First Published April 15, 2026

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • First Published July 11, 2025

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • First Published October 22, 2024

A high-resolution map of small-scale inversions in the gibbon genome

  • First Published September 30, 2022

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

  • First Published October 22, 2020

Inversion variants in human and primate genomes

  • First Published May 18, 2018

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • First Published March 21, 2018

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published September 1, 2017

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • First Published February 24, 2017

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

  • First Published October 7, 2016

Hominoid fission of chromosome 14/15 and the role of segmental duplications

  • First Published September 27, 2013

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • First Published September 11, 2013

Evolution and diversity of copy number variation in the great ape lineage

  • First Published July 3, 2013

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • First Published March 11, 2013

LRRC37 gene family" > Evolutionary dynamism of the primate LRRC37 gene family

  • First Published October 11, 2012

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012

GENCODE: The reference human genome annotation for The ENCODE Project

  • First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • First Published September 5, 2012

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published March 14, 2012

Copy number variation of individual cattle genomes using next-generation sequencing

  • First Published February 2, 2012

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

  • First Published June 17, 2011

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

  • First Published February 7, 2011

C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

  • First Published December 22, 2010

Alu repeat discovery and characterization within human genomes" > Alu repeat discovery and characterization within human genomes

  • First Published December 3, 2010

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

  • First Published November 16, 2010

Analysis of copy number variations among diverse cattle breeds

  • First Published March 8, 2010

The genomic architecture of segmental duplications and associated copy number variants in dogs

  • First Published January 7, 2009

MSB: A mean-shift-based approach for the analysis of structural variation in the genome

  • First Published November 26, 2008

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

  • First Published November 24, 2008

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • First Published May 16, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • First Published February 7, 2008

Predicting essential genes in fungal genomes

  • First Published August 9, 2006

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

  • First Published April 10, 2006

Design optimization methods for genomic DNA tiling arrays

  • First Published December 19, 2005

A genome-wide survey of structural variation between human and chimpanzee

  • First Published September 16, 2005

Assessing the limits of genomic data integration for predicting protein networks

  • First Published July 5, 2005

Punctuated duplication seeding events during the evolution of human chromosome 2p11

  • First Published June 17, 2005

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

  • First Published May 2, 2005

Recurrent Sites for New Centromere Seeding

  • First Published September 1, 2004

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

  • First Published June 1, 2004

Analysis of Segmental Duplications and Genome Assembly in the Mouse

  • First Published May 3, 2004

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome

  • First Published December 1, 2003

Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions

  • First Published April 1, 2003

Complex Events in the Evolution of the Human Pseudoautosomal Region 2 (PAR2)

  • First Published January 14, 2003

Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25

  • First Published January 1, 2003

Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons

  • First Published November 1, 2002

Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome

  • First Published October 1, 2002

Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22

  • First Published February 1, 2002

Relating Whole-Genome Expression Data with Protein-Protein Interactions

  • First Published January 1, 2002

KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms" > Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

  • First Published January 1, 2002

Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function

  • First Published September 1, 2001

Centromere Emergence in Evolution

  • First Published April 1, 2001
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