Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Research
Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
- First Published August 20, 2020
Resource
A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
- First Published October 24, 2019
Method
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Research
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Corrigendum
Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published December 1, 2017
Method
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
- First Published October 11, 2017
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Corrigendum
Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published November 1, 2016
Method
An extended set of yeast-based functional assays accurately identifies human disease mutations
- First Published March 14, 2016
Research
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
- First Published February 12, 2015
Research
Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals
- First Published November 13, 2014
Research
Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published October 7, 2014
Research
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
- First Published September 3, 2013
Research
Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
- First Published August 23, 2012
Research
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
- First Published July 10, 2012
Research
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010
Research
A CTCF-independent role for cohesin in tissue-specific transcription
- First Published March 10, 2010
Resource
Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
- First Published October 2, 2009
Resource
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
- First Published June 23, 2009
Methods
Shifted Transversal Design smart-pooling for high coverage interactome mapping
- First Published May 15, 2009
Letter
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
- First Published April 28, 2009
Methods
Genome-wide nucleotide-level mammalian ancestor reconstruction
- First Published October 10, 2008
RESOURCE
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
- First Published June 24, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
ARTICLE
The landscape of histone modifications across 1% of the human genome in five human cell lines
- First Published June 13, 2007
RESOURCE
Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
- First Published April 1, 2005
LETTER
New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
- First Published February 1, 2005
PERSPECTIVE
ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
- First Published October 15, 2004
Insight/Outlook
Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources
- First Published October 15, 2004
LETTER
C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
- First Published October 15, 2004
RESOURCE
Human ORFeome Version 1.1: A Platform for Reverse Proteomics
- First Published October 15, 2004
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
LETTER
Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
- First Published January 1, 2003
METHODS
Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”
- First Published December 1, 2001
METHODS
A Genetic Strategy to Eliminate Self-Activator Baits Prior to High-Throughput Yeast Two-Hybrid Screens
- First Published November 1, 1999