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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Aliza B. Rubenstein
Gregory R. Smith
Zidong Zhang
Xi Chen
Toby L. Chambers
Frederique Ruf-Zamojski Natalia Mendelev Wan Sze Cheng Michel Zamojski Mary Anne S. Amper Venugopalan D. Nair Andrew R. Marderstein Stephen B. Montgomery Olga G. Troyanskaya
... [+9 authors] ...,
Elena Zaslavsky
Todd Trappe
Scott Trappe
Stuart C. Sealfon

First Published May 20, 2025

Resource

Modeling transcriptional regulation of model species with deep learning

Evan M. Cofer
João Raimundo
Alicja Tadych
Yuji Yamazaki
Aaron K. Wong
Chandra L. Theesfeld
Michael S. Levine
Olga G. Troyanskaya

First Published April 22, 2021

Resource

Modeling molecular development of breast cancer in canine mammary tumors

Kiley Graim
Dmitriy Gorenshteyn
David G. Robinson
Nicholas J. Carriero
James A. Cahill
Rumela Chakrabarti Michael H. Goldschmidt Amy C. Durham Julien Funk John D. Storey
... [+5 authors] ...,
Vessela N. Kristensen
Chandra L. Theesfeld
Karin U. Sorenmo
Olga G. Troyanskaya

First Published December 23, 2020

Resource

C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution" > The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

Adam D. Warner
Louis Gevirtzman
LaDeana W. Hillier
Brent Ewing
Robert H. Waterston

First Published May 23, 2019

Resource

C. elegans" > The time-resolved transcriptome of C. elegans

Max E. Boeck
Chau Huynh
Lou Gevirtzman
Owen A. Thompson
Guilin Wang
Dionna M. Kasper
Valerie Reinke
LaDeana W. Hillier
Robert H. Waterston

First Published August 16, 2016

Resource

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Wesley C. Warren
Anna J. Jasinska
Raquel García-Pérez
Hannes Svardal
Chad Tomlinson
Mariano Rocchi Nicoletta Archidiacono Oronzo Capozzi Patrick Minx Michael J. Montague Kim Kyung LaDeana W. Hillier Milinn Kremitzki Tina Graves Colby Chiang Jennifer Hughes Nam Tran Yu Huang Vasily Ramensky Oi-wa Choi Yoon J. Jung Christopher A. Schmitt Nikoleta Juretic Jessica Wasserscheid Trudy R. Turner Roger W. Wiseman Jennifer J. Tuscher Julie A. Karl Jörn E. Schmitz Roland Zahn David H. O'Connor Eugene Redmond Alex Nisbett Béatrice Jacquelin Michaela C. Müller-Trutwin Jason M. Brenchley Michel Dione Martin Antonio Gary P. Schroth Jay R. Kaplan Matthew J. Jorgensen Gregg W.C. Thomas Matthew W. Hahn Brian J. Raney Bronwen Aken Rishi Nag Juergen Schmitz Gennady Churakov Angela Noll Roscoe Stanyon David Webb Francoise Thibaud-Nissen Magnus Nordborg Tomas Marques-Bonet
... [+49 authors] ...,
Ken Dewar
George M. Weinstock
Richard K. Wilson
Nelson B. Freimer

First Published September 16, 2015

Method

Defining cell-type specificity at the transcriptional level in human disease

Wenjun Ju
Casey S. Greene
Felix Eichinger
Viji Nair
Jeffrey B. Hodgin
Markus Bitzer Young-suk Lee Qian Zhu Masami Kehata Min Li Song Jiang
... [+6 authors] ...,
Maria Pia Rastaldi
Clemens D. Cohen
Olga G. Troyanskaya
Matthias Kretzler

First Published August 15, 2013

Research

Evolution and diversity of copy number variation in the great ape lineage

Peter H. Sudmant
John Huddleston
Claudia R. Catacchio
Maika Malig
LaDeana W. Hillier
Carl Baker Kiana Mohajeri Ivanela Kondova Ronald E. Bontrop Stephan Persengiev Francesca Antonacci
... [+6 authors] ...,
Mario Ventura
Javier Prado-Martinez
Tomas Marques-Bonet
Evan E. Eichler

First Published July 3, 2013

Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Owen Thompson
Mark Edgley
Pnina Strasbourger
Stephane Flibotte
Brent Ewing
Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
... [+13 authors] ...,
Emily H. Turner
LaDeana W. Hillier
Donald G. Moerman
Robert H. Waterston

First Published June 25, 2013

Resource

C. elegans reveals promoter and enhancer architectures" > The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

Ron A.-J. Chen
Thomas A. Down
Przemyslaw Stempor
Q. Brent Chen
Thea A. Egelhofer
LaDeana W. Hillier
Tess E. Jeffers
Julie Ahringer

First Published April 2, 2013

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Your search for returned 23 results

Resource

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Resource

Modeling transcriptional regulation of model species with deep learning

Resource

Modeling molecular development of breast cancer in canine mammary tumors

Resource

C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution" > The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

Resource

C. elegans" > The time-resolved transcriptome of C. elegans

Resource

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Method

Defining cell-type specificity at the transcriptional level in human disease

Research

Evolution and diversity of copy number variation in the great ape lineage

Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Resource

C. elegans reveals promoter and enhancer architectures" > The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

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