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Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

  • Kevin Judd McKernan
  • Heather E. Peckham
  • Gina L. Costa
  • Stephen F. McLaughlin
  • Yutao Fu
  • Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
  • ... [+36 authors] ...,
  • Evan E. Eichler
  • Martin G. Reese
  • Francisco M. De La Vega
  • Alan P. Blanchard
  • First Published June 22, 2009
LETTER

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

  • Laurie Gordon
  • Shan Yang
  • Mary Tran-Gyamfi
  • Dan Baggott
  • Mari Christensen
  • Aaron Hamilton Richard Crooijmans
  • ... [+2 authors] ...,
  • Martien Groenen
  • Susan Lucas
  • Ivan Ovcharenko
  • Lisa Stubbs
  • First Published October 5, 2007
LETTER

Comparative Analysis of Apicomplexa and Genomic Diversity in Eukaryotes

  • Thomas J. Templeton
  • Lakshminarayan M. Iyer
  • Vivek Anantharaman
  • Shinichiro Enomoto
  • Juan E. Abrahante
  • G.M. Subramanian
  • Stephen L. Hoffman
  • Mitchell S. Abrahamsen
  • L. Aravind
  • First Published September 1, 2004
LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

  • Kateryna D. Makova
  • Shan Yang
  • Francesca Chiaromonte
  • First Published April 1, 2004
ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

  • Shan Yang
  • Arian F. Smit
  • Scott Schwartz
  • Francesca Chiaromonte
  • Krishna M. Roskin
  • David Haussler
  • Webb Miller
  • Ross C. Hardison
  • First Published April 1, 2004
LETTER

Distinguishing Regulatory DNA From Neutral Sites

  • Laura Elnitski
  • Ross C. Hardison
  • Jia Li
  • Shan Yang
  • Diana Kolbe
  • Pallavi Eswara
  • ... [+1 authors] ...,
  • Michael J. O'Connor
  • Scott Schwartz
  • Webb Miller
  • Francesca Chiaromonte
  • First Published January 1, 2003
ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

  • Ross C. Hardison
  • Krishna M. Roskin
  • Shan Yang
  • Mark Diekhans
  • W. James Kent
  • Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
  • ... [+9 authors] ...,
  • Arian Smit
  • Webb Miller
  • Francesca Chiaromonte
  • David Haussler
  • First Published January 1, 2003
INSIGHT/OUTLOOK

Intraproteomic Networks: New Forays Into Predicting Interaction Partners

  • L. Aravind
  • Lakshminarayan M. Iyer
  • First Published August 1, 2002
LETTER

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

  • Olivier Lespinet
  • Yuri I. Wolf
  • Eugene V. Koonin
  • L. Aravind
  • First Published July 1, 2002
LETTER

Prokaryotic Homologs of the Eukaryotic DNA-End-Binding Protein Ku, Novel Domains in the Ku Protein and Prediction of a Prokaryotic Double-Strand Break Repair System

  • L. Aravind
  • Eugene V. Koonin
  • First Published August 1, 2001
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