Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Method
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
- First Published July 11, 2023
Method
Analyzing rare mutations in metagenomes assembled using long and accurate reads
- First Published November 23, 2022
Method
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
- First Published November 15, 2022
Method
Variations in antibody repertoires correlate with vaccine responses
- First Published March 31, 2022
Research
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
- First Published June 29, 2021
Research
V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
- First Published September 18, 2020
Method
Plasmid detection and assembly in genomic and metagenomic data sets
- First Published May 2, 2019
Research
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
- First Published November 6, 2018
Method
Detection and analysis of ancient segmental duplications in mammalian genomes
- First Published May 7, 2018
Corrigendum
Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published October 3, 2016
Method
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
- First Published March 2, 2016
Method
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
- First Published March 30, 2015
Method
Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
- First Published April 5, 2013
Research
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Research
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published March 28, 2012
Research
A matter of life or death: How microsatellites emerge in and vanish from the human genome
- First Published October 12, 2011
Research
The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
- First Published March 10, 2010
Letter
Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions
- First Published June 5, 2009
Methods
Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
- First Published April 21, 2008
LETTER
The genome-wide determinants of human and chimpanzee microsatellite evolution
- First Published November 21, 2007
Methods
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
- First Published August 9, 2007
RESOURCE
A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
- First Published June 13, 2007
Forum
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
- First Published March 1, 2006
Chicken Special/Letters
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
- First Published December 8, 2004
LETTER
Alu repeat elements reveals complex evolutionary history" > Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
- First Published November 1, 2004
LETTER
Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents
- First Published April 1, 2004
ARTICLE
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
- First Published April 1, 2004
LETTER
Divergence in the Spatial Pattern of Gene Expression Between Human Duplicate Genes
- First Published July 1, 2003
LETTER
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
- First Published January 1, 2002
METHODS
Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry
- First Published February 1, 2001