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In memoriam

Jim Watson (1928–2025): a genomics visionary

  • First Published July 23, 2026
Research

Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources

  • First Published May 14, 2026
Method

Highly accurate assembly polishing with DeepPolisher

  • First Published May 19, 2025
Method

Accurate sequencing of DNA motifs able to form alternative (non-B) structures

  • First Published July 11, 2023
In memoriam

C. Thomas Caskey (1938–2022)

  • First Published February 17, 2022
Research

Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome

  • First Published June 29, 2021
Research

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

  • First Published November 6, 2018
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • First Published June 8, 2017
Corrigendum

Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • First Published October 3, 2016
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • First Published March 14, 2016
Method

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

  • First Published March 2, 2016
Method

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

  • First Published March 30, 2015
Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • First Published March 11, 2013
Research

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • First Published March 28, 2012
Research

A matter of life or death: How microsatellites emerge in and vanish from the human genome

  • First Published October 12, 2011
Research

The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important

  • First Published March 10, 2010
Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

  • First Published October 2, 2009
Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

  • First Published June 23, 2009
Letter

Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions

  • First Published June 5, 2009
Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

  • First Published May 15, 2009
LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

  • First Published May 23, 2008
LETTER

The genome-wide determinants of human and chimpanzee microsatellite evolution

  • First Published November 21, 2007
RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • First Published June 13, 2007
RESOURCE

C. elegans ORFeome by cloning TWINSCAN predictions" > Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

  • First Published April 1, 2005
LETTER

C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones" > New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones

  • First Published February 1, 2005
RESOURCE

Caenorhabditis elegans Promoterome" > A First Version of the Caenorhabditis elegans Promoterome

  • First Published October 15, 2004
PERSPECTIVE

ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List

  • First Published October 15, 2004
Insight/Outlook

Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources

  • First Published October 15, 2004
RESOURCE

Human ORFeome Version 1.1: A Platform for Reverse Proteomics

  • First Published October 15, 2004
RESOURCE

Brucella melitensis ORFeome Version 1.1" > Generation of the Brucella melitensis ORFeome Version 1.1

  • First Published October 15, 2004
Methods

A Gateway-Compatible Yeast One-Hybrid System

  • First Published October 15, 2004
Methods

C. elegans Proteins" > High-Throughput Expression of C. elegans Proteins

  • First Published October 15, 2004
LETTER

C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions" > C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions

  • First Published October 15, 2004
Methods

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

  • First Published June 1, 2004
LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

  • First Published April 1, 2004
LETTER

Divergence in the Spatial Pattern of Gene Expression Between Human Duplicate Genes

  • First Published July 1, 2003
METHODS

Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”

  • First Published December 1, 2001
METHODS

A Genetic Strategy to Eliminate Self-Activator Baits Prior to High-Throughput Yeast Two-Hybrid Screens

  • First Published November 1, 1999
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