Perspective
The Topological Regulatory Logic of noncoding RNA–mediated gene expression
- First Published June 17, 2026
Research
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
- First Published June 21, 2021
Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Research
Arabidopsis thaliana" > Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
- First Published July 3, 2018
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Method
A flexible method for estimating the fraction of fitness influencing mutations from large sequencing data sets
- First Published April 14, 2016
Research
Comprehensive identification and analysis of human accelerated regulatory DNA
- First Published June 23, 2015
Research
De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
- First Published June 28, 2013
Research
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
- First Published May 29, 2013
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Research
Personal and population genomics of human regulatory variation
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Method
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- First Published August 30, 2012
Method
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
- First Published August 26, 2011
Resource
Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines
- First Published December 22, 2010
Research
Signatures of positive selection apparent in a small sample of human exomes
- First Published August 6, 2010
Perspective
Constructing genomic maps of positive selection in humans: Where do we go from here?
- First Published May 1, 2009
Resource
The genomic architecture of segmental duplications and associated copy number variants in dogs
- First Published January 7, 2009
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
LETTER
Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
- First Published January 29, 2008
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Genomic signatures of positive selection in humans and the limits of outlier approaches
- First Published July 6, 2006
LETTER
Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes
- First Published September 1, 2005
Methods
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
- First Published July 5, 2005
Methods
Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
- First Published February 1, 2005
ARTICLE
Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
- First Published March 1, 2004
LETTER
Interrogating a High-Density SNP Map for Signatures of Natural Selection
- First Published December 1, 2002
METHODS
Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation
- First Published July 12, 2001
LETTER
Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis
- First Published April 1, 2001
METHODS
Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data
- First Published November 21, 2000
