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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

Wolffia australiana" > Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana

  • Tom Denyer
  • Pin-Jou Wu
  • Kelly Colt
  • Bradley W. Abramson
  • Zhili Pang
  • Pavel Solansky Allen Mamerto Tatsuya Nobori
  • ... [+3 authors] ...,
  • Joseph R. Ecker
  • Eric Lam
  • Todd P. Michael
  • Marja C.P. Timmermans
  • First Published July 1, 2024
Research

Wolffia australiana link morphological minimization with gene loss and less growth control" > Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control

  • Todd P. Michael
  • Evan Ernst
  • Nolan Hartwick
  • Philomena Chu
  • Douglas Bryant
  • Sarah Gilbert Stefan Ortleb Erin L. Baggs K. Sowjanya Sree Klaus J. Appenroth Joerg Fuchs Florian Jupe Justin P. Sandoval Ksenia V. Krasileva Ljudmylla Borisjuk
  • ... [+10 authors] ...,
  • Todd C. Mockler
  • Joseph R. Ecker
  • Robert A. Martienssen
  • Eric Lam
  • First Published December 23, 2020
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways

  • Weishi Yu
  • Carl McIntosh
  • Ryan Lister
  • Iris Zhu
  • Yixing Han
  • Jianke Ren David Landsman Eunice Lee Victorino Briones
  • ... [+4 authors] ...,
  • Minoru Terashima
  • Robert Leighty
  • Joseph R. Ecker
  • Kathrin Muegge
  • First Published August 28, 2014
Research

cis-mediated silencing in somatic cells" > Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells

  • Timothy J. Looney
  • Li Zhang
  • Chih-Hsin Chen
  • Jae Hyun Lee
  • Sheila Chari
  • Frank Fuxiang Mao Mattia Pelizzola Lu Zhang Ryan Lister Samuel W. Baker Croydon J. Fernandes Jedidiah Gaetz Kara M. Foshay Kayla L. Clift Zhenyu Zhang Wei-Qiang Li Eric J. Vallender Ulrich Wagner Jane Yuxia Qin Katelyn J. Michelini Branimir Bugarija Donghyun Park Emmanuel Aryee Thomas Stricker Jie Zhou Kevin P. White Bing Ren
  • ... [+22 authors] ...,
  • Gary P. Schroth
  • Joseph R. Ecker
  • Andy Peng Xiang
  • Bruce T. Lahn
  • First Published December 5, 2013
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Research

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

  • Robert J. Schmitz
  • Yupeng He
  • Oswaldo Valdés-López
  • Saad M. Khan
  • Trupti Joshi
  • Mark A. Urich Joseph R. Nery
  • ... [+2 authors] ...,
  • Brian Diers
  • Dong Xu
  • Gary Stacey
  • Joseph R. Ecker
  • First Published June 5, 2013
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